Centriflaken: An automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples

• Kranti Konganti,

  Roles Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Scientific Computing Support, Office of Applied Microbiology and Technology (OAMT), Office of Laboratory Operations and Applied Science (OLOAS), Human Foods Program (HFP), Food and Drug Administration, College Park, Maryland, United States of America

  ⨯
• Julie A. Kase,

  Roles Data curation, Funding acquisition, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Microbial Methods Development Branch, Division of Food and Environmental Safety, Office of Applied Microbiology and Technology (OAMT), Office of Laboratory Operations and Applied Science (OLOAS), Human Foods Program (HFP), Food and Drug Administration, College Park, Maryland, United States of America

  ⨯
• Narjol Gonzalez-Escalona

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: narjol.gonzalez-escalona@fda.hhs.gov

  Affiliation Genomics Development and Applications Branch, Division of Food Safety Genomics, Office of Applied Microbiology and Technology (OAMT), Office of Laboratory Operations and Applied Science (OLOAS), Human Foods Program (HFP), Food and Drug Administration, College Park, Maryland, United States of America

  https://orcid.org/0000-0003-4568-0022

  ⨯