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TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data
- Sophie Gagnon,
- Emmanuelle Ametepe,
- Floriane Point,
- William Cloutier Charette,
- Arpita Chakravarti,
- Paul Rivest,
- Pierre-Marie Akochy,
- Hafid Soualhine,
- Zamin Iqbal,
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Michael B. Hall ,
Roles Data curation, Software, Visualization, Writing – review & editing
¶These authors contributed equally to this work.
Affiliation European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, United Kingdom
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Simon Grandjean Lapierre
Roles Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Resources, Supervision, Visualization, Writing – review & editing
* E-mail: simon.grandjean.lapierre@umontreal.ca
¶These authors contributed equally to this work.
Affiliations Immunopathology Axis, Centre de Recherche du Centre Hospitalier de l’Université de Montréal, Montréal, Québec, Canada, Department of Microbiology, Infectious Diseases and Immunology, Université de Montréal, Montréal, Québec, Canada
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https://orcid.org/0000-0003-3683-6208
TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data
- Sophie Gagnon,
- Emmanuelle Ametepe,
- Floriane Point,
- William Cloutier Charette,
- Arpita Chakravarti,
- Paul Rivest,
- Pierre-Marie Akochy,
- Hafid Soualhine,
- Zamin Iqbal,
- Michael B. Hall
- Published: June 16, 2025
- https://doi.org/10.1371/journal.pone.0325914