A systematic approach to study the effects of acquisition parameters and biological factors on computerized mammography analysis using ex vivo human tissue: A protocol description

• Nicole Hernández ,

  Roles Conceptualization, Investigation, Methodology, Writing – original draft, Writing – review & editing

  * E-mail: nicole.hernandezduran@tuni.fi

  Affiliations Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, Department of Radiology, Tampere University Hospital, Tampere, Finland

  https://orcid.org/0000-0001-9391-7157

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• Tomppa Pakarinen ,

  Contributed equally to this work with: Tomppa Pakarinen, Annukka Salminen

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliations Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, Department of Medical Physics, The Wellbeing Services County of Pirkanmaa, Tampere, Finland

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• Annukka Salminen ,

  Contributed equally to this work with: Tomppa Pakarinen, Annukka Salminen

  Roles Methodology, Writing – review & editing

  Affiliations Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, Department of Radiology, Tampere University Hospital, Tampere, Finland

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• Santiago Laguna Castro,

  Roles Writing – review & editing

  Affiliations Computational Biophysics and Imaging Group, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, BioMediTech Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland

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• Ulla Karhunen-Enckell,

  Roles Writing – review & editing

  Affiliations Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, Department of Surgery, Tampere University Hospital, Tampere, Finland

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• Markus Hannula,

  Roles Writing – review & editing

  Affiliations Computational Biophysics and Imaging Group, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, BioMediTech Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland

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• Ritva Heljasvaara,

  Roles Writing – review & editing

  Affiliation Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland

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• Jari Hyttinen,

  Roles Writing – review & editing

  Affiliations Computational Biophysics and Imaging Group, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, BioMediTech Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland

  https://orcid.org/0000-0003-1850-3055

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• Katriina Joensuu,

  Roles Writing – review & editing

  Affiliations Department of Surgery, Tampere University Hospital, Tampere, Finland, Department of Plastic Surgery, Tampere University Hospital, Tampere, Finland

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• Otto Jokelainen,

  Roles Writing – review & editing

  Affiliations Institute of Clinical Medicine, Pathology and Forensic Medicine, University of Eastern Finland, Kuopio, Finland, Department of Clinical Pathology, Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland

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• Arja Jukkola,

  Roles Writing – review & editing

  Affiliations Department of Oncology, Tampere University Hospital, Tampere, Finland, Cancer Center, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland

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• Sanna-Maria Karppinen,

  Roles Writing – review & editing

  Affiliation Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland

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• Auni Lindgren,

  Roles Writing – review & editing

  Affiliations Department of Gynecology and Obstetrics, Kuopio University Hospital, Kuopio, Finland, Institute of Clinical Medicine, University of Eastern Finland, Kuopio, Finland

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• Eero Lääperi,

  Roles Writing – review & editing

  Affiliation Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland

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• Emilia Peuhu,

  Roles Writing – review & editing

  Affiliations Institute of Biomedicine, Cancer Laboratory FICAN West, University of Turku, Turku, Finland, Turku Bioscience Centre, University of Turku, Turku, Finland, Åbo Akademi University, Turku, Finland

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• Taina Pihlajaniemi,

  Roles Writing – review & editing

  Affiliation Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland

  ⨯
• Renata Prunskaite-Hyyryläinen,

  Roles Writing – review & editing

  Affiliation Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland

  ⨯
• Kirsi Rilla,

  Roles Writing – review & editing

  Affiliation Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland

  ⨯
• Pekka Ruusuvuori,

  Roles Writing – review & editing

  Affiliations Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, Institute of Biomedicine, University of Turku, Turku, Finland

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• Leena Latonen,

  Roles Writing – review & editing

  Affiliations Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland, Institute of Biomedicine, University of Turku, Turku, Finland

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• Teemu Tolonen,

  Roles Writing – review & editing

  Affiliation Department of Pathology, Fimlab Laboratories, Tampere, Finland

  ⨯
• Masi Valkonen,

  Roles Writing – review & editing

  Affiliation Institute of Biomedicine, University of Turku, Turku, Finland

  ⨯
• Mira Valkonen,

  Roles Writing – review & editing

  Affiliations Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, Institute of Biomedicine, University of Turku, Turku, Finland

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• Miska Vuorlaakso,

  Roles Writing – review & editing

  Affiliations Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, Department of Musculoskeletal Surgery and Diseases, Tampere University Hospital, Tampere, Finland

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• Said Pertuz,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  Affiliation Department of Electrical, Electronics and Telecommunications Engineering, Universidad Industrial de Santander, Bucaramanga, Colombia

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• Irina Rinta-Kiikka,

  Roles Conceptualization, Methodology, Supervision, Writing – review & editing

  Affiliations Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, Department of Radiology, Tampere University Hospital, Tampere, Finland

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•  [ ... ],
• Otso Arponen

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Institute of Clinical Medicine, University of Eastern Finland, Kuopio, North Savo, Finland

  https://orcid.org/0000-0002-8541-0126

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