Collaborative metabolic curation of an emerging model marine bacterium, Alteromonas macleodii ATCC 27126

Daniel Sher; Emma E. George; Matthias Wietz; Scott Gifford; Luca Zoccarato; Osnat Weissberg; Coco Koedooder; Waseem Bashir Valiya Kalladi; Marcelo M. Barreto Filho; Raul Mireles; Stas Malavin; Michal Liddor Naim; Tal Idan; Vibhaw Shrivastava; Lynne Itelson; Dagan Sade; Alhan Abu Hamoud; Yara Soussan-Farhat; Noga Barak; Peter Karp; Lisa R. Moore

doi:10.1371/journal.pone.0321141

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Peer-reviewed

Research Article

Collaborative metabolic curation of an emerging model marine bacterium, Alteromonas macleodii ATCC 27126

Daniel Sher ,

Contributed equally to this work with: Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Lisa R. Moore

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

* E-mail: dsher@univ.haia.ac.il

Affiliation Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Israel

https://orcid.org/0000-0001-6164-5126

⨯
Emma E. George ,

Contributed equally to this work with: Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Lisa R. Moore

Roles Data curation, Formal analysis, Visualization, Writing – original draft, Writing – review & editing

Affiliation Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California, United States of America
⨯
Matthias Wietz ,

Contributed equally to this work with: Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Lisa R. Moore

Roles Data curation, Formal analysis, Visualization, Writing – original draft, Writing – review & editing

Affiliations Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany, Max Planck Institute for Marine Microbiology, Bremen, Germany
⨯
Scott Gifford ,

Contributed equally to this work with: Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Lisa R. Moore

Roles Data curation, Formal analysis, Writing – original draft, Writing – review & editing

Affiliation Department of Earth, Marine and Environmental Sciences, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
⨯
Luca Zoccarato ,

Contributed equally to this work with: Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Lisa R. Moore

Roles Data curation, Formal analysis, Writing – original draft, Writing – review & editing

Affiliations Institute of Computational Biology, University of Natural Resources and Life Sciences, Vienna, Austria, Core Facility Bioinformatics, University of Natural Resources and Life Sciences, Vienna, Austria
⨯
Osnat Weissberg ,

Contributed equally to this work with: Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Lisa R. Moore

Roles Data curation, Formal analysis, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Israel
⨯
Coco Koedooder,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliations The Fredy and Nadine Herrmann Institute of Earth Sciences, Hebrew University of Jerusalem, Jerusalem, Israel, The Interuniversity Institute for Marine Sciences in Eilat, Eilat, Israel, Israel Oceanographic and Limnological Research, Haifa, Israel
⨯
Waseem Bashir Valiya Kalladi,

Roles Data curation, Formal analysis, Visualization, Writing – review & editing

Affiliation Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Israel
⨯
Marcelo M. Barreto Filho,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation University of Alabama at Birmingham, United States of America
⨯
Raul Mireles,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Department of Plant Pathology and Microbiology, Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel,
⨯
Stas Malavin,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliations Israel Oceanographic and Limnological Research, Haifa, Israel, Zuckerberg Institute for Water Research, Ben-Gurion University of the Negev, Beer-Sheba, Israel

https://orcid.org/0000-0003-0470-9378

⨯
Michal Liddor Naim,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Avram and Stella Goldstein-Goren Department of Biotechnology Engineering, Ben-Gurion University of the Negev, Beer-Sheva, Israel
⨯
Tal Idan,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Department of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot, Israel
⨯
Vibhaw Shrivastava,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Israel
⨯
Lynne Itelson,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation School of Zoology, Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv, Israel
⨯
Dagan Sade,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Department of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot, Israel
⨯
Alhan Abu Hamoud,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Israel
⨯
Yara Soussan-Farhat,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Israel
⨯
Noga Barak,

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Israel
⨯
Peter Karp,

Roles Conceptualization, Funding acquisition, Methodology, Resources, Software, Supervision, Writing – review & editing

Affiliation Bioinformatics Research Group, SRI International, Menlo Park, California, United States of America.
⨯
[ ... ],
Lisa R. Moore

Contributed equally to this work with: Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Lisa R. Moore

Roles Conceptualization, Data curation, Formal analysis, Writing – original draft, Writing – review & editing

Affiliation Bioinformatics Research Group, SRI International, Menlo Park, California, United States of America.
⨯
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Collaborative metabolic curation of an emerging model marine bacterium, Alteromonas macleodii ATCC 27126

Daniel Sher,
Emma E. George,
Matthias Wietz,
Scott Gifford,
Luca Zoccarato,
Osnat Weissberg,
Coco Koedooder,
Waseem Bashir Valiya Kalladi,
Marcelo M. Barreto Filho,
Raul Mireles

Published: April 24, 2025
https://doi.org/10.1371/journal.pone.0321141

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