SARS-CoV-2 Omicron subvariant genomic variation associations with immune evasion in Northern California: A retrospective cohort study

• Joshua R. Nugent ,

  Roles Formal analysis, Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: joshua.r.nugent@kp.org

  Affiliation Division of Research, Kaiser Permanente Northern California, Oakland, California, United States of America

  https://orcid.org/0000-0002-4479-9673

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• Mariah S. Wood,

  Roles Conceptualization, Formal analysis, Methodology, Writing – review & editing

  Affiliation Division of Research, Kaiser Permanente Northern California, Oakland, California, United States of America

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• Liyan Liu,

  Roles Conceptualization, Formal analysis, Methodology, Writing – review & editing

  Affiliation Division of Research, Kaiser Permanente Northern California, Oakland, California, United States of America

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• Teal Bullick,

  Roles Formal analysis, Writing – review & editing

  Affiliation Viral and Rickettsial Disease Laboratory, Center for Laboratory Sciences, California Department of Public Health, Richmond, California, United States of America

  https://orcid.org/0000-0001-9043-6155

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• Jeffrey M. Schapiro,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation The Permanente Medical Group, Kaiser Permanente Northern California, Oakland, California, United States of America

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• Phacharee Arunleung,

  Roles Writing – review & editing

  Affiliation Viral and Rickettsial Disease Laboratory, Center for Laboratory Sciences, California Department of Public Health, Richmond, California, United States of America

  https://orcid.org/0000-0002-2446-4227

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• Gautham Gautham,

  Roles Writing – review & editing

  Affiliation Viral and Rickettsial Disease Laboratory, Center for Laboratory Sciences, California Department of Public Health, Richmond, California, United States of America

  https://orcid.org/0000-0002-6858-5346

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• Shiffen Getabecha,

  Roles Writing – review & editing

  Affiliation Viral and Rickettsial Disease Laboratory, Center for Laboratory Sciences, California Department of Public Health, Richmond, California, United States of America

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• Christina Morales,

  Roles Writing – review & editing

  Affiliation Viral and Rickettsial Disease Laboratory, Center for Laboratory Sciences, California Department of Public Health, Richmond, California, United States of America

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• Laura B. Amsden,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Division of Research, Kaiser Permanente Northern California, Oakland, California, United States of America

  https://orcid.org/0000-0003-1178-2792

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• Crystal A. Hsiao,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Division of Research, Kaiser Permanente Northern California, Oakland, California, United States of America

  https://orcid.org/0000-0003-0806-2671

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• Debra A. Wadford,

  Roles Supervision, Writing – review & editing

  Affiliation Viral and Rickettsial Disease Laboratory, Center for Laboratory Sciences, California Department of Public Health, Richmond, California, United States of America

  https://orcid.org/0000-0002-8630-427X

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• Stacia K. Wyman,

  Roles Conceptualization, Formal analysis, Methodology, Writing – original draft, Writing – review & editing

  Affiliation Innovative Genomics Institute, University of California, Berkeley, California, United States of America

  https://orcid.org/0000-0002-8937-8397

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• Jacek Skarbinski

  Roles Conceptualization, Formal analysis, Methodology, Supervision, Writing – original draft, Writing – review & editing

  Affiliations Division of Research, Kaiser Permanente Northern California, Oakland, California, United States of America, The Permanente Medical Group, Kaiser Permanente Northern California, Oakland, California, United States of America, Department of Infectious Diseases, Oakland Medical Center, Kaiser Permanente Northern California, Oakland, California, United States of America, Physician Researcher Program, Kaiser Permanente Northern California, Oakland, California, United States of America

  https://orcid.org/0000-0003-1630-5733

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