Fast and accurate imputation of genotypes from noisy low-coverage sequencing data in bi-parental populations

• Cécile Triay ,

  Contributed equally to this work with: Cécile Triay, Alice Boizet

  Roles Conceptualization, Formal analysis, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliation DIADE, IRD, Cirad, University of Montpellier, Montpellier, France

  https://orcid.org/0000-0002-7339-0762

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• Alice Boizet ,

  Contributed equally to this work with: Cécile Triay, Alice Boizet

  Roles Conceptualization, Software, Writing – original draft, Writing – review & editing

  Affiliation AGAP, Cirad, INRAE, Montpellier SupAgro, University of Montpellier, Montpellier, France

  https://orcid.org/0000-0003-4096-6689

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• Christopher Fragoso,

  Roles Writing – review & editing

  Affiliations Verinomics, Inc., New Haven, CT, United States of America, Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, CT, United States of America

  https://orcid.org/0000-0001-5330-2588

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• Anestis Gkanogiannis,

  Roles Writing – review & editing

  Affiliation Agrobiotechnology Unit, Alliance Bioversity-CIAT, International Center for Tropical Agriculture, Cali, Colombia

  https://orcid.org/0000-0002-6441-0688

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• Jean-François Rami,

  Roles Conceptualization, Resources, Writing – review & editing

  Affiliation AGAP, Cirad, INRAE, Montpellier SupAgro, University of Montpellier, Montpellier, France

  https://orcid.org/0000-0002-5679-3877

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• Mathias Lorieux

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Resources, Software, Writing – original draft, Writing – review & editing

  * E-mail: mathias.lorieux@ird.fr

  Affiliations DIADE, IRD, Cirad, University of Montpellier, Montpellier, France, Agrobiotechnology Unit, Alliance Bioversity-CIAT, International Center for Tropical Agriculture, Cali, Colombia

  https://orcid.org/0000-0001-9864-3933

  ⨯