High-resolution hybrid micro-CT imaging pipeline for mouse brain region segmentation and volumetric morphometry

Rohan Nadkarni; Zay Yar Han; Robert J. Anderson; Alex J. Allphin; Darin P. Clark; Alexandra Badea; Cristian T. Badea

doi:10.1371/journal.pone.0303288

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Open Access

Peer-reviewed

Research Article

High-resolution hybrid micro-CT imaging pipeline for mouse brain region segmentation and volumetric morphometry

Rohan Nadkarni,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
⨯
Zay Yar Han,

Roles Data curation, Methodology, Writing – review & editing

Affiliation Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
⨯
Robert J. Anderson,

Roles Formal analysis, Methodology, Software, Writing – review & editing

Affiliation Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
⨯
Alex J. Allphin,

Roles Software, Writing – review & editing

Affiliation Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
⨯
Darin P. Clark,

Roles Software, Writing – review & editing

Affiliation Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
⨯
Alexandra Badea,

Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

Affiliation Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America
⨯
Cristian T. Badea

Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

* E-mail: cristian.badea@duke.edu

Affiliation Quantitative Imaging and Analysis Lab, Department of Radiology, Duke University Medical Center, Durham, NC, United States of America

https://orcid.org/0000-0002-1850-2522

⨯

High-resolution hybrid micro-CT imaging pipeline for mouse brain region segmentation and volumetric morphometry

Rohan Nadkarni,
Zay Yar Han,
Robert J. Anderson,
Alex J. Allphin,
Darin P. Clark,
Alexandra Badea,
Cristian T. Badea

Published: May 23, 2024
https://doi.org/10.1371/journal.pone.0303288

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