A novel system to culture human intestinal organoids under physiological oxygen content to study microbial-host interaction

• Tatiana Y. Fofanova ,

  Contributed equally to this work with: Tatiana Y. Fofanova, Umesh C. Karandikar

  Roles Conceptualization, Data curation, Investigation, Project administration, Software, Writing – original draft

  Affiliation Alkek Centre for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America

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• Umesh C. Karandikar ,

  Contributed equally to this work with: Tatiana Y. Fofanova, Umesh C. Karandikar

  Roles Writing – original draft, Writing – review & editing

  Affiliation Alkek Centre for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America

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• Jennifer M. Auchtung,

  Roles Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Alkek Centre for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, United States of America

  https://orcid.org/0000-0003-3038-583X

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• Reid L. Wilson,

  Roles Investigation, Methodology

  Affiliations Department of Bioengineering, Rice University, Houston, TX, United States of America, Medical Scientist Training Program, Baylor College of Medicine, Houston, TX, United States of America

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• Antonio J. Valentin,

  Roles Investigation

  Affiliation Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America

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• Robert A. Britton,

  Roles Resources

  Affiliation Alkek Centre for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America

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• K. Jane Grande-Allen,

  Roles Resources

  Affiliation Department of Bioengineering, Rice University, Houston, TX, United States of America

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• Mary K. Estes,

  Roles Funding acquisition, Resources, Writing – review & editing

  Affiliations Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America, Department of Medicine, Baylor College of Medicine, Houston, TX, United States of America

  https://orcid.org/0000-0002-4813-4249

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• Kristi Hoffman,

  Roles Project administration

  Affiliation Alkek Centre for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America

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• Sashirekha Ramani,

  Roles Writing – review & editing

  Affiliation Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America

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• Christopher J. Stewart ,

  Roles Investigation, Writing – original draft, Writing – review & editing

  * E-mail: christopher.stewart@newcastle.ac.uk (CJS); jpetrosi@bcm.edu (JFP)

  Affiliations Alkek Centre for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America, Translational and Clinical Research Institute, Newcastle University, Newcastle, United Kingdom

  https://orcid.org/0000-0002-6033-338X

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• Joseph F. Petrosino

  Roles Conceptualization, Resources

  * E-mail: christopher.stewart@newcastle.ac.uk (CJS); jpetrosi@bcm.edu (JFP)

  Affiliations Alkek Centre for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America

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