MicroBundleCompute: Automated segmentation, tracking, and analysis of subdomain deformation in cardiac microbundles

• Hiba Kobeissi,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Mechanical Engineering, Boston University, Boston, MA, United States of America, Center for Multiscale and Translational Mechanobiology, Boston University, Boston, MA, United States of America

  ⨯
• Javiera Jilberto,

  Roles Data curation, Methodology, Software, Validation, Visualization, Writing – original draft

  Affiliation Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, United States of America

  ⨯
• M. Çağatay Karakan,

  Roles Data curation, Methodology, Writing – original draft

  Affiliations Department of Mechanical Engineering, Boston University, Boston, MA, United States of America, Photonics Center, Boston University, Boston, MA, United States of America, Department of Biomedical Engineering, Boston University, Boston, MA, United States of America

  https://orcid.org/0000-0002-7587-8913

  ⨯
• Xining Gao,

  Roles Data curation, Methodology, Writing – original draft

  Affiliations Department of Biomedical Engineering, Boston University, Boston, MA, United States of America, Harvard-MIT Program in Health Sciences and Technology, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA, United States of America, Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, United States of America

  ⨯
• Samuel J. DePalma,

  Roles Data curation, Methodology, Writing – original draft

  Affiliation Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, United States of America

  https://orcid.org/0000-0001-6708-5019

  ⨯
• Shoshana L. Das,

  Roles Data curation, Methodology, Writing – original draft

  Affiliations Department of Biomedical Engineering, Boston University, Boston, MA, United States of America, Harvard-MIT Program in Health Sciences and Technology, Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA, United States of America, Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, United States of America

  ⨯
• Lani Quach,

  Roles Data curation

  Affiliation Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, United States of America

  ⨯
• Jonathan Urquia,

  Roles Software

  Affiliation Department of Electrical and Computer Engineering, New York Institute of Technology, New York, NY, United States of America

  ⨯
• Brendon M. Baker,

  Roles Funding acquisition, Resources, Supervision, Writing – review & editing

  Affiliation Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, United States of America

  ⨯
• Christopher S. Chen,

  Roles Funding acquisition, Resources, Supervision, Writing – review & editing

  Affiliations Department of Biomedical Engineering, Boston University, Boston, MA, United States of America, Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, United States of America

  ⨯
• David Nordsletten,

  Roles Funding acquisition, Resources, Supervision, Writing – original draft

  Affiliations Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, United States of America, Department of Cardiac Surgery, University of Michigan, Ann Arbor, MI, United States of America, Department of Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, King’s Health Partners, King’s College London, King’s Health Partners, London, United Kingdom

  ⨯
• Emma Lejeune

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: elejeune@bu.edu

  Affiliations Department of Mechanical Engineering, Boston University, Boston, MA, United States of America, Center for Multiscale and Translational Mechanobiology, Boston University, Boston, MA, United States of America

  https://orcid.org/0000-0001-8099-3468

  ⨯