Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in layers

• Mathilde Doublet,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – original draft

  Affiliation PEGASE, INRAE, Institut Agro, Saint Gilles, France

  https://orcid.org/0009-0000-5913-7851

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• Fabien Degalez,

  Roles Methodology, Supervision, Writing – review & editing

  Affiliation PEGASE, INRAE, Institut Agro, Saint Gilles, France

  https://orcid.org/0000-0001-8252-6425

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• Sandrine Lagarrigue,

  Roles Supervision, Writing – review & editing

  Affiliation PEGASE, INRAE, Institut Agro, Saint Gilles, France

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• Laetitia Lagoutte,

  Roles Methodology, Resources

  Affiliation PEGASE, INRAE, Institut Agro, Saint Gilles, France

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• Elise Gueret,

  Roles Methodology

  Affiliation MGX-Montpellier GenomiX, Univ. Montpellier, CNRS, INSERM, Montpellier, France

  https://orcid.org/0000-0003-0714-3197

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• Sophie Allais ,

  Contributed equally to this work with: Sophie Allais, Frédéric Lecerf

  Roles Conceptualization, Investigation, Project administration, Supervision, Validation, Writing – review & editing

  Affiliation PEGASE, INRAE, Institut Agro, Saint Gilles, France

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• Frédéric Lecerf

  Contributed equally to this work with: Sophie Allais, Frédéric Lecerf

  Roles Conceptualization, Investigation, Methodology, Project administration, Supervision, Validation, Writing – review & editing

  * E-mail: frederic.lecerf@institut-agro.com

  Affiliation PEGASE, INRAE, Institut Agro, Saint Gilles, France

  https://orcid.org/0000-0002-6471-1771

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