Coarse-grained molecular dynamics-guided immunoinformatics to explain the binder and non-binder classification of Cytotoxic T-cell epitope for SARS-CoV-2 peptide-based vaccine discovery

• Muhammad Yusuf ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: m.yusuf@unpad.ac.id

  Affiliations Faculty of Mathematics and Natural Sciences, Department of Chemistry, Universitas Padjadjaran, Bandung, West Java, Indonesia, Research Center for Molecular Biotechnology and Bioinformatics, Universitas Padjadjaran, Bandung, West Java, Indonesia

  https://orcid.org/0000-0003-1627-1553

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• Wanda Destiarani,

  Roles Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Research Center for Molecular Biotechnology and Bioinformatics, Universitas Padjadjaran, Bandung, West Java, Indonesia

  https://orcid.org/0000-0003-0968-6830

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• Wahyu Widayat,

  Roles Data curation, Formal analysis, Investigation

  Affiliation Faculty of Pharmacy, Pharmaceutical Biology Science, Universitas Mulawarman, Samarinda, East Kalimantan, Indonesia

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• Yosua Yosua,

  Roles Data curation, Formal analysis, Investigation, Methodology

  Affiliation Research Center for Molecular Biotechnology and Bioinformatics, Universitas Padjadjaran, Bandung, West Java, Indonesia

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• Gilang Gumilar,

  Roles Formal analysis, Methodology, Resources

  Affiliation Research Center for Electronics, National Research and Innovation Agency Republic of Indonesia (BRIN), Bandung, West Java, Indonesia

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• Angelica Shalfani Tanudireja,

  Roles Data curation, Formal analysis

  Affiliation Faculty of Mathematics and Natural Sciences, Department of Chemistry, Universitas Padjadjaran, Bandung, West Java, Indonesia

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• Fauzian Giansyah Rohmatulloh,

  Roles Formal analysis, Investigation, Software

  Affiliation Research Center for Molecular Biotechnology and Bioinformatics, Universitas Padjadjaran, Bandung, West Java, Indonesia

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• Farhan Azhwin Maulana,

  Roles Data curation, Formal analysis, Investigation

  Affiliation Research Center for Molecular Biotechnology and Bioinformatics, Universitas Padjadjaran, Bandung, West Java, Indonesia

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• Umi Baroroh,

  Roles Data curation, Formal analysis, Visualization

  Affiliations Research Center for Molecular Biotechnology and Bioinformatics, Universitas Padjadjaran, Bandung, West Java, Indonesia, Department of Biotechnology, Indonesian School of Pharmacy, Bandung, West Java, Indonesia

  https://orcid.org/0000-0003-2011-7161

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• Ari Hardianto,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Visualization, Writing – review & editing

  Affiliation Faculty of Mathematics and Natural Sciences, Department of Chemistry, Universitas Padjadjaran, Bandung, West Java, Indonesia

  https://orcid.org/0000-0001-6065-5437

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• Rani Maharani,

  Roles Formal analysis, Methodology, Supervision

  Affiliation Faculty of Mathematics and Natural Sciences, Department of Chemistry, Universitas Padjadjaran, Bandung, West Java, Indonesia

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• Neni Nurainy,

  Roles Conceptualization, Methodology, Resources, Supervision

  Affiliation Department of Research and Development, PT Bio Farma, Bandung, West Java, Indonesia

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• Acep Riza Wijayadikusumah,

  Roles Conceptualization, Resources, Supervision

  Affiliation Department of Research and Development, PT Bio Farma, Bandung, West Java, Indonesia

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• Ryan B. Ristandi,

  Roles Resources, Supervision

  Affiliation West Java Provincial Reference Laboratory, Bandung, West Java, Indonesia

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• Ines Irene Caterina Atmosukarto,

  Roles Conceptualization, Methodology, Resources, Supervision

  Affiliation Lipotek Pty Ltd. The John Curtin School of Medical Research, The Australian National University, Canberra, Australia

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•  [ ... ],
• Toto Subroto

  Roles Conceptualization, Resources, Supervision

  Affiliations Faculty of Mathematics and Natural Sciences, Department of Chemistry, Universitas Padjadjaran, Bandung, West Java, Indonesia, Research Center for Molecular Biotechnology and Bioinformatics, Universitas Padjadjaran, Bandung, West Java, Indonesia

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