U-Net based vessel segmentation for murine brains with small micro-magnetic resonance imaging reference datasets

• Christoph Praschl ,

  Roles Methodology, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: christoph.praschl@fh-hagenberg.at

  Affiliation Department of Medical and Bioinformatics, School of Informatics, Communications and Media, University of Applied Sciences Upper Austria, Hagenberg i. M., Austria

  https://orcid.org/0000-0002-9711-4818

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• Lydia M. Zopf,

  Roles Conceptualization, Data curation, Resources, Validation, Writing – original draft, Writing – review & editing

  Affiliations Ludwig Boltzmann Institute for Experimental and Clinical Traumatology in the AUVA trauma research center, Austrian Cluster for Tissue Regeneration, Vienna, Austria, Vienna BioCenter Core Facilities GmbH (VBCF), Vienna, Austria

  https://orcid.org/0000-0002-4895-0596

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• Emma Kiemeyer,

  Roles Investigation, Methodology, Software, Visualization

  Affiliation Department of Medical and Bioinformatics, School of Informatics, Communications and Media, University of Applied Sciences Upper Austria, Hagenberg i. M., Austria

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• Ines Langthallner,

  Roles Conceptualization, Methodology, Software, Visualization

  Affiliation Department of Medical and Bioinformatics, School of Informatics, Communications and Media, University of Applied Sciences Upper Austria, Hagenberg i. M., Austria

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• Daniel Ritzberger,

  Roles Investigation, Methodology, Software, Visualization

  Affiliation Department of Medical and Bioinformatics, School of Informatics, Communications and Media, University of Applied Sciences Upper Austria, Hagenberg i. M., Austria

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• Adrian Slowak,

  Roles Investigation, Methodology, Software, Visualization

  Affiliation Department of Medical and Bioinformatics, School of Informatics, Communications and Media, University of Applied Sciences Upper Austria, Hagenberg i. M., Austria

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• Martin Weigl,

  Roles Investigation, Methodology, Software, Visualization

  Affiliation Department of Medical and Bioinformatics, School of Informatics, Communications and Media, University of Applied Sciences Upper Austria, Hagenberg i. M., Austria

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• Valentin Blüml,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Vienna BioCenter Core Facilities GmbH (VBCF), Vienna, Austria

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• Nebojša Nešić,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Faculty of Informatics and Computation, Singidunum University, Belgrade, Serbia

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• Miloš Stojmenović,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Faculty of Informatics and Computation, Singidunum University, Belgrade, Serbia

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• Kathrin M. Kniewallner,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Institute of Molecular Regenerative Medicine, Spinal Cord Injury and Tissue Regeneration Center Salzburg, Paracelsus Medical University, Salzburg, Austria

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• Ludwig Aigner,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Institute of Molecular Regenerative Medicine, Spinal Cord Injury and Tissue Regeneration Center Salzburg, Paracelsus Medical University, Salzburg, Austria

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• Stephan Winkler,

  Roles Supervision, Writing – original draft, Writing – review & editing

  Affiliation Department of Medical and Bioinformatics, School of Informatics, Communications and Media, University of Applied Sciences Upper Austria, Hagenberg i. M., Austria

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• Andreas Walter

  Roles Conceptualization, Funding acquisition, Resources, Writing – original draft, Writing – review & editing

  Affiliations Vienna BioCenter Core Facilities GmbH (VBCF), Vienna, Austria, Centre of Optical Technologies, Aalen University, Aalen, Germany

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