Performance of amplicon and capture based next-generation sequencing approaches for the epidemiological surveillance of Omicron SARS-CoV-2 and other variants of concern

• Carlos Daviña-Núñez,

  Roles Investigation, Methodology, Visualization, Writing – original draft

  Affiliations Microbiology and Infectology Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), Vigo, Spain, Universidade de Vigo, Vigo, Spain

  https://orcid.org/0000-0001-6952-2219

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• Sonia Pérez ,

  Roles Formal analysis, Software, Supervision, Writing – review & editing

  * E-mail: sonia.maria.perez.castro@sergas.es

  Affiliations Microbiology and Infectology Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), Vigo, Spain, Microbiology Department, Complexo Hospitalario Universitario de Vigo (CHUVI), SERGAS, Vigo, Spain

  https://orcid.org/0000-0003-1734-1904

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• Jorge Julio Cabrera-Alvargonzález,

  Roles Validation, Visualization, Writing – review & editing

  Affiliations Microbiology and Infectology Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), Vigo, Spain, Microbiology Department, Complexo Hospitalario Universitario de Vigo (CHUVI), SERGAS, Vigo, Spain

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• Anniris Rincón-Quintero,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliations Microbiology and Infectology Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), Vigo, Spain, Microbiology Department, Complexo Hospitalario Universitario de Vigo (CHUVI), SERGAS, Vigo, Spain

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• Ana Treinta-Álvarez,

  Roles Investigation, Methodology

  Affiliation Microbiology Department, Complexo Hospitalario Universitario de Vigo (CHUVI), SERGAS, Vigo, Spain

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• Montse Godoy-Diz,

  Roles Investigation, Methodology

  Affiliation Microbiology Department, Complexo Hospitalario Universitario de Vigo (CHUVI), SERGAS, Vigo, Spain

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• Silvia Suárez-Luque,

  Roles Supervision, Validation

  Affiliation Dirección Xeral de Saúde Pública, Xunta de Galicia, Consellería de Sanidade, Santiago de Compostela, A Coruña, Spain

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• Benito Regueiro-García

  Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

  Affiliation Microbiology and Infectology Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), Vigo, Spain

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