Semi-automated protocol to quantify and characterize fluorescent three-dimensional vascular images

• Danny F. Xie,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America, Department of Biomedical Engineering, University of California-Irvine, Irvine, CA, United States of America

  https://orcid.org/0000-0001-9838-5268

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• Christian Crouzet,

  Roles Methodology, Supervision, Writing – review & editing

  Affiliations Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America, Department of Biomedical Engineering, University of California-Irvine, Irvine, CA, United States of America

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• Krystal LoPresti,

  Roles Conceptualization, Formal analysis, Investigation, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America, Department of Biomedical Engineering, University of California-Irvine, Irvine, CA, United States of America

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• Yuke Wang,

  Roles Conceptualization, Investigation, Writing – original draft, Writing – review & editing

  Affiliations Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America, Department of Biomedical Engineering, University of California-Irvine, Irvine, CA, United States of America

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• Christopher Robinson,

  Roles Conceptualization, Investigation, Writing – original draft, Writing – review & editing

  Affiliations Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America, Department of Biomedical Engineering, University of California-Irvine, Irvine, CA, United States of America

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• William Jones,

  Roles Visualization, Writing – review & editing

  Affiliation Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America

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• Fjolla Muqolli,

  Roles Visualization, Writing – review & editing

  Affiliation Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America

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• Chuo Fang,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Department of Neurology, University of California-Irvine, Irvine, CA, United States of America

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• David H. Cribbs,

  Roles Funding acquisition, Resources, Writing – review & editing

  Affiliation Institute for Memory Impairments and Neurological Disorders, University of California-Irvine, Irvine, CA, United States of America

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• Mark Fisher,

  Roles Funding acquisition, Resources, Writing – review & editing

  Affiliations Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America, Department of Neurology, University of California-Irvine, Irvine, CA, United States of America, Institute for Memory Impairments and Neurological Disorders, University of California-Irvine, Irvine, CA, United States of America, Department of Pathology & Laboratory Medicine, University of California-Irvine, Irvine, CA, United States of America

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• Bernard Choi

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Software, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: choib@uci.edu

  Affiliations Beckman Laser Institute and Medical Clinic, University of California-Irvine, Irvine, CA, United States of America, Department of Biomedical Engineering, University of California-Irvine, Irvine, CA, United States of America

  https://orcid.org/0000-0002-4380-8291

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