Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics

• Eby M. Sim ,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: eby.sim@sydney.edu.au

  Affiliations Sydney Institute for Infectious Diseases, The University of Sydney, Westmead, New South Wales, Australia, Institute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia, Centre for Infectious Diseases and Microbiology- Public Health, Westmead Hospital, Westmead, New South Wales, Australia

  https://orcid.org/0000-0002-3716-7344

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• Qinning Wang,

  Roles Investigation, Resources, Writing – original draft, Writing – review & editing

  Affiliation Institute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia

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• Peter Howard,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Institute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia

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• Rady Kim,

  Roles Investigation, Writing – review & editing

  Affiliation Institute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia

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• Ling Lim,

  Roles Investigation, Writing – review & editing

  Affiliation Institute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia

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• Kirsty Hope,

  Roles Investigation, Writing – review & editing

  Affiliation Health Protection, New South Wales Ministry of Health, North Sydney, New South Wales, Australia

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• Vitali Sintchenko

  Roles Conceptualization, Funding acquisition, Supervision, Writing – original draft, Writing – review & editing

  Affiliations Sydney Institute for Infectious Diseases, The University of Sydney, Westmead, New South Wales, Australia, Institute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia, Centre for Infectious Diseases and Microbiology- Public Health, Westmead Hospital, Westmead, New South Wales, Australia

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