SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022

• Kathleen Subramoney ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: kathleen.subramoney@nhls.ac.za

  Affiliations School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa, Department of Virology, National Health Laboratory Service, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa

  https://orcid.org/0000-0001-6037-9890

  ⨯
• Nkhensani Mtileni,

  Roles Methodology, Writing – review & editing

  Affiliation Department of Virology, National Health Laboratory Service, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa

  ⨯
• Ashlyn Davis,

  Roles Methodology, Writing – review & editing

  Affiliation School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa

  ⨯
• Jennifer Giandhari,

  Roles Methodology, Writing – review & editing

  Affiliation KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa

  ⨯
• Houriiyah Tegally,

  Roles Methodology, Writing – review & editing

  Affiliations KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa, Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa

  ⨯
• Eduan Wilkinson,

  Roles Methodology, Writing – review & editing

  Affiliation Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa

  ⨯
• Yeshnee Naidoo,

  Roles Methodology, Writing – review & editing

  Affiliation Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa

  ⨯
• Yajna Ramphal,

  Roles Methodology, Writing – review & editing

  Affiliation KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa

  ⨯
• Sureshnee Pillay,

  Roles Methodology, Writing – review & editing

  Affiliation KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa

  ⨯
• Upasana Ramphal,

  Roles Methodology, Writing – review & editing

  Affiliation KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa

  https://orcid.org/0000-0002-2441-3868

  ⨯
• Andiswa Simane,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Department of Virology, National Health Laboratory Service, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa

  ⨯
• Bhaveshan Reddy,

  Roles Methodology, Writing – review & editing

  Affiliations School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa, Department of Virology, National Health Laboratory Service, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa

  ⨯
• Bonolo Mashishi,

  Roles Methodology, Writing – review & editing

  Affiliations School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa, Department of Virology, National Health Laboratory Service, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa

  ⨯
• Nonhlanhla Mbenenge,

  Roles Methodology, Writing – review & editing

  Affiliations School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa, Department of Virology, National Health Laboratory Service, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa

  ⨯
• Tulio de Oliveira,

  Roles Funding acquisition, Methodology, Writing – review & editing

  Affiliations KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa, Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa

  ⨯
• Burtram C. Fielding,

  Roles Conceptualization, Investigation, Supervision, Writing – review & editing

  Affiliation Molecular Biology and Virology Research Laboratory, Department of Medical BioSciences, University of the Western Cape, Cape Town, South Africa

  https://orcid.org/0000-0002-1873-3363

  ⨯
•  [ ... ],
• Florette K. Treurnicht

  Roles Conceptualization, Funding acquisition, Resources, Supervision, Writing – original draft, Writing – review & editing

  Affiliations School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa, Department of Virology, National Health Laboratory Service, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa

  ⨯
• [ view all ]
• [ view less ]