Classification of bacterial plasmid and chromosome derived sequences using machine learning

Xiaohui Zou; Marcus Nguyen; Jamie Overbeek; Bin Cao; James J. Davis

doi:10.1371/journal.pone.0279280

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Open Access

Peer-reviewed

Research Article

Classification of bacterial plasmid and chromosome derived sequences using machine learning

Xiaohui Zou,

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Resources, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliation Laboratory of Clinical Microbiology and Infectious Diseases, Department of Pulmonary and Critical Care Medicine, Center for Respiratory Diseases, China-Japan Friendship Hospital, National Clinical Research Centre for Respiratory Disease, Beijing, China
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Marcus Nguyen,

Roles Conceptualization, Methodology, Software, Supervision, Writing – review & editing

Affiliations Data Science and Learning Division, Computing Environment and Life Sciences Directorate, Argonne National Laboratory, Lemont, IL, United States of America, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, United States of America
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Jamie Overbeek,

Roles Conceptualization, Supervision, Validation, Writing – review & editing

Affiliations Data Science and Learning Division, Computing Environment and Life Sciences Directorate, Argonne National Laboratory, Lemont, IL, United States of America, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, United States of America
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Bin Cao ,

Roles Funding acquisition, Resources, Supervision, Writing – review & editing

* E-mail: jjdavis@anl.gov (JJD); caobin_ben@163.com (BC)

Affiliation Laboratory of Clinical Microbiology and Infectious Diseases, Department of Pulmonary and Critical Care Medicine, Center for Respiratory Diseases, China-Japan Friendship Hospital, National Clinical Research Centre for Respiratory Disease, Beijing, China
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James J. Davis

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

* E-mail: jjdavis@anl.gov (JJD); caobin_ben@163.com (BC)

Affiliations Data Science and Learning Division, Computing Environment and Life Sciences Directorate, Argonne National Laboratory, Lemont, IL, United States of America, Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, United States of America

https://orcid.org/0000-0003-0435-6891

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Classification of bacterial plasmid and chromosome derived sequences using machine learning

Xiaohui Zou,
Marcus Nguyen,
Jamie Overbeek,
Bin Cao,
James J. Davis

Published: December 16, 2022
https://doi.org/10.1371/journal.pone.0279280

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Neural networks
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Bacteriophages
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Machine learning
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Mobile genetic elements
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Sequence databases
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Transposable elements
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Plasmids
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