microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation

• Tim Scherr ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: tim.scherr@kit.edu (TS); k.noeh@fz-juelich.de (KN); ralf.mikut@kit.edu (RM)

  Affiliation Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

  https://orcid.org/0000-0001-8755-2825

  ⨯
• Johannes Seiffarth,

  Roles Data curation, Methodology, Software, Writing – review & editing

  Affiliations Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, Jülich, Germany, Computational Systems Biology (AVT.CSB), RWTH Aachen University, Aachen, Germany

  https://orcid.org/0000-0002-2087-9847

  ⨯
• Bastian Wollenhaupt,

  Roles Data curation, Investigation, Software, Writing – review & editing

  Affiliation Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, Jülich, Germany

  ⨯
• Oliver Neumann,

  Roles Investigation, Methodology, Software, Writing – review & editing

  Affiliation Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

  https://orcid.org/0000-0003-4438-300X

  ⨯
• Marcel P. Schilling,

  Roles Methodology, Writing – review & editing

  Affiliation Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

  https://orcid.org/0000-0001-7366-2134

  ⨯
• Dietrich Kohlheyer,

  Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

  Affiliation Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, Jülich, Germany

  ⨯
• Hanno Scharr ,

  Contributed equally to this work with: Hanno Scharr, Katharina Nöh

  Roles Conceptualization, Funding acquisition, Writing – review & editing

  Affiliations Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany, Institute for Advanced Simulation, IAS-8: Data Analytics and Machine Learning, Forschungszentrum Jülich GmbH, Jülich, Germany

  ⨯
• Katharina Nöh ,

  Contributed equally to this work with: Hanno Scharr, Katharina Nöh

  Roles Conceptualization, Funding acquisition, Project administration, Writing – review & editing

  * E-mail: tim.scherr@kit.edu (TS); k.noeh@fz-juelich.de (KN); ralf.mikut@kit.edu (RM)

  Affiliation Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, Jülich, Germany

  https://orcid.org/0000-0002-5407-2275

  ⨯
• Ralf Mikut

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  * E-mail: tim.scherr@kit.edu (TS); k.noeh@fz-juelich.de (KN); ralf.mikut@kit.edu (RM)

  Affiliation Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

  https://orcid.org/0000-0001-9100-5496

  ⨯