ggmotif: An R Package for the extraction and visualization of motifs from MEME software

Xiang Li; Linna Ma; Xinyue Mei; Yixiang Liu; Huichuan Huang

doi:10.1371/journal.pone.0276979

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Open Access

Peer-reviewed

Research Article

ggmotif: An R Package for the extraction and visualization of motifs from MEME software

Xiang Li,

Roles Conceptualization, Data curation, Software, Visualization, Writing – original draft

Affiliations State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China, Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
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Linna Ma,

Roles Writing – original draft

Affiliations State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China, Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
⨯
Xinyue Mei,

Roles Writing – review & editing

Affiliations State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China, Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
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Yixiang Liu,

Roles Writing – review & editing

Affiliations State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China, Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
⨯
Huichuan Huang

Roles Conceptualization, Funding acquisition, Resources, Supervision, Writing – review & editing

* E-mail: absklhhc@gmail.com

Affiliations State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China, Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China

https://orcid.org/0000-0002-8400-7116

⨯

ggmotif: An R Package for the extraction and visualization of motifs from MEME software

Xiang Li,
Linna Ma,
Xinyue Mei,
Yixiang Liu,
Huichuan Huang

Published: November 3, 2022
https://doi.org/10.1371/journal.pone.0276979

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Sequence motif analysis
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Phylogenetic analysis
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Computer software
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DNA
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