Rapid genotyping of targeted viral samples using Illumina short-read sequencing data

• Alex Váradi,

  Roles Conceptualization, Software, Validation, Writing – original draft, Writing – review & editing

  Affiliations Department of Metagenomics, University of Debrecen, Debrecen, Hungary, Department of Laboratory Medicine, University of Pécs, Pécs, Hungary

  https://orcid.org/0000-0001-8229-6340

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• Eszter Kaszab,

  Roles Data curation, Formal analysis, Methodology, Writing – review & editing

  Affiliations Department of Metagenomics, University of Debrecen, Debrecen, Hungary, Veterinary Medical Research Institute, Budapest, Hungary

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• Gábor Kardos,

  Roles Conceptualization, Funding acquisition, Investigation, Resources, Writing – review & editing

  Affiliation Department of Metagenomics, University of Debrecen, Debrecen, Hungary

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• Eszter Prépost,

  Roles Funding acquisition, Project administration, Writing – review & editing

  Affiliation Department of Metagenomics, University of Debrecen, Debrecen, Hungary

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• Krisztina Szarka,

  Roles Conceptualization, Project administration, Resources, Validation, Writing – review & editing

  Affiliation Department of Metagenomics, University of Debrecen, Debrecen, Hungary

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• Levente Laczkó

  Roles Conceptualization, Data curation, Software, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: laczko.levente@med.unideb.hu

  Affiliations Department of Metagenomics, University of Debrecen, Debrecen, Hungary, ELKH-DE Conservation Biology Research Group, Debrecen, Hungary

  https://orcid.org/0000-0002-9379-7527

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