Genomic inbreeding and runs of homozygosity analysis of indigenous cattle populations in southern China

Yuqiang Liu; Guoyao Zhao; Xiaojue Lin; Jiahao Zhang; Guanyu Hou; Luepei Zhang; Dewu Liu; Yaokun Li; Junya Li; Lingyang Xu

doi:10.1371/journal.pone.0271718

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Open Access

Peer-reviewed

Research Article

Genomic inbreeding and runs of homozygosity analysis of indigenous cattle populations in southern China

Yuqiang Liu ,

Contributed equally to this work with: Yuqiang Liu, Guoyao Zhao

Roles Methodology, Software, Writing – original draft

Affiliations Innovation Team of Cattle Genetic Breeding, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China, College of Animal Science, South China Agricultural University, Guangzhou, China
⨯
Guoyao Zhao ,

Contributed equally to this work with: Yuqiang Liu, Guoyao Zhao

Roles Formal analysis, Writing – original draft

Affiliation Innovation Team of Cattle Genetic Breeding, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China
⨯
Xiaojue Lin,

Roles Resources

Affiliation College of Animal Science, South China Agricultural University, Guangzhou, China
⨯
Jiahao Zhang,

Roles Resources

Affiliation College of Animal Science, South China Agricultural University, Guangzhou, China
⨯
Guanyu Hou,

Roles Resources

Affiliation Tropical Crop Germplasm Research Institute, Chinese Academy of Tropical Agricultural Sciences, Hainan, China
⨯
Luepei Zhang,

Roles Resources

Affiliation Innovation Team of Cattle Genetic Breeding, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China
⨯
Dewu Liu,

Roles Resources

Affiliation College of Animal Science, South China Agricultural University, Guangzhou, China
⨯
Yaokun Li,

Roles Resources

Affiliation College of Animal Science, South China Agricultural University, Guangzhou, China
⨯
Junya Li ,

Roles Writing – review & editing

* E-mail: lijunya@caas.cn (JL); xulingyang@caas.cn (LX)

Affiliation Innovation Team of Cattle Genetic Breeding, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China
⨯
Lingyang Xu

Roles Conceptualization, Formal analysis, Writing – review & editing

* E-mail: lijunya@caas.cn (JL); xulingyang@caas.cn (LX)

Affiliation Innovation Team of Cattle Genetic Breeding, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China

https://orcid.org/0000-0002-8463-6668

⨯

Genomic inbreeding and runs of homozygosity analysis of indigenous cattle populations in southern China

Yuqiang Liu,
Guoyao Zhao,
Xiaojue Lin,
Jiahao Zhang,
Guanyu Hou,
Luepei Zhang,
Dewu Liu,
Yaokun Li,
Junya Li,
Lingyang Xu

Published: August 25, 2022
https://doi.org/10.1371/journal.pone.0271718

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Cattle
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Inbreeding
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Genomics
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Islands
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Single nucleotide polymorphisms
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Homozygosity
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Livestock
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Immunity
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