Metagenomic analysis of the gut microbiota in piglets either challenged or not with enterotoxigenic Escherichia coli reveals beneficial effects of probiotics on microbiome composition, resistome, digestive function and oxidative stress responses

• Prasert Apiwatsiri,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Visualization, Writing – original draft

  Affiliation Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand

  https://orcid.org/0000-0002-7141-1494

  ⨯
• Pawiya Pupa,

  Roles Investigation, Methodology, Resources

  Affiliation Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand

  ⨯
• Wandee Sirichokchatchawan,

  Roles Conceptualization, Methodology, Resources

  Affiliation College of Public Health Sciences, Chulalongkorn University, Bangkok, Thailand

  ⨯
• Vorthon Sawaswong,

  Roles Data curation, Investigation, Methodology

  Affiliations Program in Bioinformatics and Computational Biology, Graduate School, Chulalongkorn University, Bangkok, Thailand, Research Unit of Systems Microbiology, Department of Biochemistry, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand

  ⨯
• Pattaraporn Nimsamer,

  Roles Data curation, Methodology, Resources, Software

  Affiliation Research Unit of Systems Microbiology, Department of Biochemistry, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand

  ⨯
• Sunchai Payungporn,

  Roles Conceptualization, Data curation, Methodology, Software, Supervision

  Affiliation Research Unit of Systems Microbiology, Department of Biochemistry, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand

  ⨯
• David J. Hampson,

  Roles Validation, Writing – review & editing

  Affiliation School of Veterinary Medicine, Murdoch University, Perth, Western Australia, Australia

  ⨯
• Nuvee Prapasarakul

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Writing – original draft, Writing – review & editing

  * E-mail: Nuvee.p@chula.ac.th

  Affiliations Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand, Center of Excellence in Diagnosis and Monitoring of Animal Pathogens, Chulalongkorn University, Bangkok, Thailand

  https://orcid.org/0000-0001-6409-4622

  ⨯