SHIMS 3.0: Highly efficient single-haplotype iterative mapping and sequencing using ultra-long nanopore reads

• Daniel W. Bellott ,

  Contributed equally to this work with: Daniel W. Bellott, Ting-Jan Cho

  Roles Conceptualization, Investigation, Methodology, Project administration, Software, Validation, Writing – original draft, Writing – review & editing

  * E-mail: bellott@wi.mit.edu

  Affiliation Whitehead Institute, Cambridge, Massachusetts, United States of America

  https://orcid.org/0000-0002-3265-7555

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• Ting-Jan Cho ,

  Contributed equally to this work with: Daniel W. Bellott, Ting-Jan Cho

  Roles Investigation, Methodology, Validation, Writing – original draft, Writing – review & editing

  Affiliation Whitehead Institute, Cambridge, Massachusetts, United States of America

  https://orcid.org/0000-0002-5641-4531

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• Emily K. Jackson,

  Roles Investigation, Methodology, Validation, Writing – review & editing

  Affiliation Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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• Helen Skaletsky,

  Roles Conceptualization, Project administration, Writing – review & editing

  Affiliations Whitehead Institute, Cambridge, Massachusetts, United States of America, Howard Hughes Medical Institute, Whitehead Institute, Cambridge, Massachusetts, United States of America

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• Jennifer F. Hughes,

  Roles Conceptualization, Project administration, Writing – review & editing

  Affiliation Whitehead Institute, Cambridge, Massachusetts, United States of America

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• David C. Page

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Whitehead Institute, Cambridge, Massachusetts, United States of America, Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Howard Hughes Medical Institute, Whitehead Institute, Cambridge, Massachusetts, United States of America

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