Deep learning-based approach to the characterization and quantification of histopathology in mouse models of colitis

• Soma Kobayashi,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft

  Affiliation Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, United States of America

  https://orcid.org/0000-0002-0470-4027

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• Jason Shieh,

  Roles Data curation, Formal analysis, Investigation, Writing – review & editing

  Affiliation Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, United States of America

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• Ainara Ruiz de Sabando,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliation Department of Medical Genetics, Complejo Hospitalario de Navarra, Pamplona, Navarra, Spain

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• Julie Kim,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliation Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, United States of America

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• Yang Liu,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliation Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, United States of America

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• Sui Y. Zee,

  Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Validation, Visualization, Writing – review & editing

  Affiliation Department of Pathology, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, United States of America

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• Prateek Prasanna,

  Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Supervision, Validation, Visualization, Writing – review & editing

  Affiliation Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, United States of America

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• Agnieszka B. Bialkowska,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, United States of America

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• Joel H. Saltz,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, United States of America, Department of Pathology, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, United States of America

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• Vincent W. Yang

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: Vincent.Yang@stonybrookmedicine.edu

  Affiliations Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, United States of America, Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, United States of America, Department of Physiology and Biophysics, Stony Brook University, Stony Brook, NY, United States of America

  https://orcid.org/0000-0002-6981-3558

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