Using whole-genome sequence data to examine the epidemiology of antimicrobial resistance in Escherichia coli from wild meso-mammals and environmental sources on swine farms, conservation areas, and the Grand River watershed in southern Ontario, Canada

• Nadine A. Vogt ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: nvogt@uoguelph.ca

  Affiliation Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada

  https://orcid.org/0000-0003-0156-4206

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• Benjamin M. Hetman,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Resources, Software, Validation, Visualization, Writing – review & editing

  Affiliation Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada

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• Adam A. Vogt,

  Roles Data curation, Formal analysis, Resources, Software, Validation, Writing – review & editing

  Affiliation Independent Researcher, Mississauga, Ontario, Canada

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• David L. Pearl,

  Roles Conceptualization, Formal analysis, Funding acquisition, Supervision, Validation, Writing – review & editing

  Affiliation Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada

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• Richard J. Reid-Smith,

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliations Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada, Centre for Foodborne, Environmental and Zoonotic Infectious Diseases, Public Health Agency of Canada, Guelph, Ontario, Canada

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• E. Jane Parmley,

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliation Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada

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• Stefanie Kadykalo,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Centre for Foodborne, Environmental and Zoonotic Infectious Diseases, Public Health Agency of Canada, Guelph, Ontario, Canada

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• Kim Ziebell,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation National Microbiology Laboratory, Public Health Agency of Canada, Guelph, Ontario, Canada

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• Amrita Bharat,

  Roles Investigation, Writing – review & editing

  Affiliations National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada, Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada

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• Michael R. Mulvey,

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliations National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada, Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada

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• Nicol Janecko,

  Roles Investigation, Writing – review & editing

  Affiliation Quadram Institute Bioscience, Norwich, United Kingdom

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• Nicole Ricker,

  Roles Supervision, Writing – review & editing

  Affiliation Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada

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• Samantha E. Allen,

  Roles Investigation, Writing – review & editing

  Affiliations Wyoming Game and Fish Department, Laramie, Wyoming, United States of America, Department of Veterinary Sciences, University of Wyoming, Laramie, Wyoming, United States of America

  https://orcid.org/0000-0001-9436-2325

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• Kristin J. Bondo,

  Roles Data curation, Investigation, Writing – review & editing

  Current address: Pennsylvania Cooperative Fish and Wildlife Unit, The Pennsylvania State University, University Park, State College, Pennsylvania, United States of America

  Affiliation Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada

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• Claire M. Jardine

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada, Canadian Wildlife Health Cooperative, Ontario Veterinary College, Guelph, Ontario, Canada

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