Inference in epidemiological agent-based models using ensemble-based data assimilation

Tadeo Javier Cocucci; Manuel Pulido; Juan Pablo Aparicio; Juan Ruíz; Mario Ignacio Simoy; Santiago Rosa

doi:10.1371/journal.pone.0264892

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Open Access

Peer-reviewed

Research Article

Inference in epidemiological agent-based models using ensemble-based data assimilation

Tadeo Javier Cocucci ,

Roles Conceptualization, Data curation, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

* E-mail: tadeojcocucci@gmail.com

Affiliations FaMAF, Universidad Nacional de Córdoba, Córdoba, Córdoba, Argentina, FaCENA, Universidad Nacional del Nordeste, Corrientes, Corrientes, Argentina

https://orcid.org/0000-0002-4509-5870

⨯
Manuel Pulido,

Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing

Affiliations FaCENA, Universidad Nacional del Nordeste, Corrientes, Corrientes, Argentina, IFAECI, CONICET, Corrientes, Corrientes, Argentina, IMIT, CONICET, Corrientes, Corrientes, Argentina
⨯
Juan Pablo Aparicio,

Roles Conceptualization, Investigation, Methodology, Resources, Software, Validation, Writing – review & editing

Affiliations INENCO, CONICET, Universidad Nacional de Salta, Salta, Salta, Argentina, Simon A. Levin Mathematical, Computational and Modeling Sciences Center, Arizona State University, Tempe, Arizona, United States of America
⨯
Juan Ruíz,

Roles Conceptualization, Investigation, Methodology, Validation, Writing – review & editing

Affiliations CIMA, CONICET, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Buenos Aires, Argentina, Sciences of the Atmosphere and the Oceans Department, FCEN, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Buenos Aires, Argentina
⨯
Mario Ignacio Simoy,

Roles Conceptualization, Investigation, Methodology, Software, Validation, Writing – review & editing

Affiliations INENCO, CONICET, Universidad Nacional de Salta, Salta, Salta, Argentina, Instituto Multidisciplinario sobre Ecosistemas y Desarrollo Sustentable, Universidad Nacional del Centro de la Provincia de Buenos Aires, Tandil, Argentina

https://orcid.org/0000-0002-8907-5126

⨯
Santiago Rosa

Roles Conceptualization, Data curation, Investigation, Methodology, Validation, Writing – review & editing

Affiliations FaMAF, Universidad Nacional de Córdoba, Córdoba, Córdoba, Argentina, FaCENA, Universidad Nacional del Nordeste, Corrientes, Corrientes, Argentina
⨯

Inference in epidemiological agent-based models using ensemble-based data assimilation

Tadeo Javier Cocucci,
Manuel Pulido,
Juan Pablo Aparicio,
Juan Ruíz,
Mario Ignacio Simoy,
Santiago Rosa

Published: March 4, 2022
https://doi.org/10.1371/journal.pone.0264892

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Epidemiology
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Agent-based modeling
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COVID 19
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Kalman filter
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Differential equations
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