Patient health records and whole viral genomes from an early SARS-CoV-2 outbreak in a Quebec hospital reveal features associated with favorable outcomes

• Bastien Paré ,

  Contributed equally to this work with: Bastien Paré, Marieke Rozendaal

  Roles Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliations CHU Sainte-Justine Research Centre, Montreal, Quebec, Canada, Department of Biochemistry and Molecular Medicine, Faculty of Medicine, Université de Montreal, Quebec, Canada

  ⨯
• Marieke Rozendaal ,

  Contributed equally to this work with: Bastien Paré, Marieke Rozendaal

  Roles Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliation CHU Sainte-Justine Research Centre, Montreal, Quebec, Canada

  https://orcid.org/0000-0002-5087-1491

  ⨯
• Sacha Morin,

  Roles Formal analysis, Visualization

  Affiliations Department of Computer Science and Operational Research, Université de Montréal, Montreal, Quebec, Canada, Mila—Quebec AI Institute, Montreal, Quebec, Canada

  ⨯
• Léa Kaufmann,

  Roles Formal analysis

  Affiliations CHU Sainte-Justine Research Centre, Montreal, Quebec, Canada, Department of Biochemistry and Molecular Medicine, Faculty of Medicine, Université de Montreal, Quebec, Canada

  ⨯
• Shawn M. Simpson,

  Roles Methodology, Writing – review & editing

  Affiliation CHU Sainte-Justine Research Centre, Montreal, Quebec, Canada

  ⨯
• Raphaël Poujol,

  Roles Formal analysis

  Affiliation Montreal Heart Institute, Montréal, Quebec, Canada

  ⨯
• Fatima Mostefai,

  Roles Formal analysis

  Affiliations Department of Biochemistry and Molecular Medicine, Faculty of Medicine, Université de Montreal, Quebec, Canada, Montreal Heart Institute, Montréal, Quebec, Canada

  ⨯
• Jean-Christophe Grenier,

  Roles Formal analysis

  Affiliation Montreal Heart Institute, Montréal, Quebec, Canada

  https://orcid.org/0000-0001-7937-5160

  ⨯
• Henry Xing,

  Roles Formal analysis

  Affiliation CHU Sainte-Justine Research Centre, Montreal, Quebec, Canada

  ⨯
• Miguelle Sanchez,

  Roles Resources

  Affiliation Department of Microbiology and Infectious Diseases, Hôpital de Verdun, Montreal, Quebec, Canada

  ⨯
• Ariane Yechouron,

  Roles Resources

  Affiliation Department of Microbiology and Infectious Diseases, Hôpital de Verdun, Montreal, Quebec, Canada

  ⨯
• Ronald Racette,

  Roles Data curation

  Affiliation Department of Emergency Medicine, Hôpital de Verdun, Montreal, Quebec, Canada

  https://orcid.org/0000-0003-1051-1667

  ⨯
• Julie G. Hussin,

  Roles Formal analysis, Methodology, Supervision

  Affiliations Montreal Heart Institute, Montréal, Quebec, Canada, Department of Medicine, Faculty of Medicine, Université de Montréal, Montreal, Quebec, Canada

  ⨯
• Guy Wolf,

  Roles Formal analysis, Methodology, Supervision

  Affiliations Mila—Quebec AI Institute, Montreal, Quebec, Canada, Department of Mathematics and Statistics, Université de Montréal, Montreal, Quebec, Canada

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• Ivan Pavlov ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: martinalexandersmith@gmail.com (MAS); ivan.pavlov.md@gmail.com (IP)

  Affiliation Department of Emergency Medicine, Hôpital de Verdun, Montreal, Quebec, Canada

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•  [ ... ],
• Martin A. Smith

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: martinalexandersmith@gmail.com (MAS); ivan.pavlov.md@gmail.com (IP)

  Affiliations CHU Sainte-Justine Research Centre, Montreal, Quebec, Canada, Department of Biochemistry and Molecular Medicine, Faculty of Medicine, Université de Montreal, Quebec, Canada

  https://orcid.org/0000-0003-2259-1713

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