Using whole-genome sequence data to examine the epidemiology of Salmonella, Escherichia coli and associated antimicrobial resistance in raccoons (Procyon lotor), swine manure pits, and soil samples on swine farms in southern Ontario, Canada

• Nadine A. Vogt ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: nvogt@uoguelph.ca

  Affiliation Department of Population Medicine, Ontario Veterinary College, Guelph, Ontario, Canada

  https://orcid.org/0000-0003-0156-4206

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• Benjamin M. Hetman,

  Roles Conceptualization, Formal analysis, Methodology, Resources, Software, Validation, Visualization, Writing – review & editing

  Affiliation Department of Population Medicine, Ontario Veterinary College, Guelph, Ontario, Canada

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• David L. Pearl,

  Roles Conceptualization, Formal analysis, Funding acquisition, Supervision, Validation, Writing – review & editing

  Affiliation Department of Population Medicine, Ontario Veterinary College, Guelph, Ontario, Canada

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• Adam A. Vogt,

  Roles Data curation, Formal analysis, Resources, Software, Validation, Writing – review & editing

  Affiliation Independent Researcher, Mississauga, Ontario, Canada

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• Richard J. Reid-Smith,

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliations Department of Population Medicine, Ontario Veterinary College, Guelph, Ontario, Canada, Centre for Foodborne, Environmental and Zoonotic Infectious Diseases, Public Health Agency of Canada, Guelph, Ontario, Canada

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• E. Jane Parmley,

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliations Department of Population Medicine, Ontario Veterinary College, Guelph, Ontario, Canada, Centre for Foodborne, Environmental and Zoonotic Infectious Diseases, Public Health Agency of Canada, Guelph, Ontario, Canada

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• Nicol Janecko,

  Roles Investigation, Writing – review & editing

  Affiliation Quadram Institute Bioscience, Norwich, United Kingdom

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• Amrita Bharat,

  Roles Investigation, Writing – review & editing

  Affiliations National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada, Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada

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• Michael R. Mulvey,

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliations National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada, Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada

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• Nicole Ricker,

  Roles Supervision, Writing – review & editing

  Affiliation Department of Pathobiology, Ontario Veterinary College, Guelph, Ontario, Canada

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• Kristin J. Bondo,

  Roles Data curation, Investigation, Writing – review & editing

  Current address: Pennsylvania Cooperative Fish and Wildlife Unit, The Pennsylvania State University, University Park, Pennsylvania, United States of America

  Affiliation Department of Pathobiology, Ontario Veterinary College, Guelph, Ontario, Canada

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• Samantha E. Allen,

  Roles Investigation, Writing – review & editing

  Affiliations Department of Pathobiology, Ontario Veterinary College, Guelph, Ontario, Canada, Wyoming Game and Fish Department, Laramie, Wyoming, United States of America, Department of Veterinary Sciences, University of Wyoming, Laramie, Wyoming, United States of America

  https://orcid.org/0000-0001-9436-2325

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• Claire M. Jardine

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Department of Pathobiology, Ontario Veterinary College, Guelph, Ontario, Canada, Canadian Wildlife Health Cooperative, Ontario Veterinary College, Guelph, Ontario, Canada

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