miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles

Upendra Kumar Pradhan; Nitesh Kumar Sharma; Prakash Kumar; Ashwani Kumar; Sagar Gupta; Ravi Shankar

doi:10.1371/journal.pone.0258550

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Open Access

Peer-reviewed

Research Article

miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles

Upendra Kumar Pradhan ,

Contributed equally to this work with: Upendra Kumar Pradhan, Nitesh Kumar Sharma

Roles Data curation, Formal analysis, Writing – original draft

Affiliations Studio of Computational Biology & Bioinformatics, The Himalayan Centre for High-throughput Computational Biology, (HiCHiCoB, A BIC supported by DBT, India)CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur (HP), India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India, ICAR-Indian Agricultural Statistics Research Institute, Library Avenue, Pusa, New Delhi, Delhi, India
⨯
Nitesh Kumar Sharma ,

Contributed equally to this work with: Upendra Kumar Pradhan, Nitesh Kumar Sharma

Roles Data curation, Formal analysis, Writing – original draft

Affiliations Studio of Computational Biology & Bioinformatics, The Himalayan Centre for High-throughput Computational Biology, (HiCHiCoB, A BIC supported by DBT, India)CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur (HP), India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
⨯
Prakash Kumar,

Roles Visualization

Affiliations Studio of Computational Biology & Bioinformatics, The Himalayan Centre for High-throughput Computational Biology, (HiCHiCoB, A BIC supported by DBT, India)CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur (HP), India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India, ICAR-Indian Agricultural Statistics Research Institute, Library Avenue, Pusa, New Delhi, Delhi, India
⨯
Ashwani Kumar,

Roles Formal analysis

Affiliation Studio of Computational Biology & Bioinformatics, The Himalayan Centre for High-throughput Computational Biology, (HiCHiCoB, A BIC supported by DBT, India)CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur (HP), India
⨯
Sagar Gupta,

Roles Formal analysis

Affiliation Studio of Computational Biology & Bioinformatics, The Himalayan Centre for High-throughput Computational Biology, (HiCHiCoB, A BIC supported by DBT, India)CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur (HP), India
⨯
Ravi Shankar

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Writing – original draft, Writing – review & editing

* E-mail: ravish@ihbt.res.in

Affiliations Studio of Computational Biology & Bioinformatics, The Himalayan Centre for High-throughput Computational Biology, (HiCHiCoB, A BIC supported by DBT, India)CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur (HP), India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India

https://orcid.org/0000-0002-4004-8047

⨯

miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles

Upendra Kumar Pradhan,
Nitesh Kumar Sharma,
Prakash Kumar,
Ashwani Kumar,
Sagar Gupta,
Ravi Shankar

Published: October 12, 2021
https://doi.org/10.1371/journal.pone.0258550

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