Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data

Zachary Stephens; Daniel O’Brien; Mrunal Dehankar; Lewis R. Roberts; Ravishankar K. Iyer; Jean-Pierre Kocher

doi:10.1371/journal.pone.0250915

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Open Access

Peer-reviewed

Research Article

Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data

Zachary Stephens,

Roles Conceptualization, Data curation, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, IL, United States of America
⨯
Daniel O’Brien,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Writing – review & editing

Affiliation Department of Health Sciences Research, Mayo Clinic, Rochester, MN, United States of America
⨯
Mrunal Dehankar,

Roles Investigation, Methodology, Software, Writing – review & editing

Affiliation Department of Health Sciences Research, Mayo Clinic, Rochester, MN, United States of America
⨯
Lewis R. Roberts,

Roles Conceptualization, Data curation, Project administration, Resources, Supervision, Writing – review & editing

Affiliation Department of Internal Medicine, Mayo Clinic, Rochester, MN, United States of America
⨯
Ravishankar K. Iyer,

Roles Project administration, Supervision, Writing – review & editing

Affiliation Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, IL, United States of America
⨯
Jean-Pierre Kocher

Roles Data curation, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

* E-mail: kocher.jeanpierre@mayo.edu

Affiliation Department of Health Sciences Research, Mayo Clinic, Rochester, MN, United States of America

https://orcid.org/0000-0002-0260-6773

⨯

Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data

Zachary Stephens,
Daniel O’Brien,
Mrunal Dehankar,
Lewis R. Roberts,
Ravishankar K. Iyer,
Jean-Pierre Kocher

Published: September 22, 2021
https://doi.org/10.1371/journal.pone.0250915

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