Cohort profile: St. Michael’s Hospital Tuberculosis Database (SMH-TB), a retrospective cohort of electronic health record data and variables extracted using natural language processing

• David Landsman,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation MAP Centre for Urban Health Solutions, Li Ka Shing Knowledge Institute, St. Michael’s Hospital, Unity Health Toronto, Toronto, Ontario, Canada

  https://orcid.org/0000-0001-8214-5585

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• Ahmed Abdelbasit,

  Roles Data curation, Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Medicine, University of Toronto, Toronto, Ontario, Canada

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• Christine Wang,

  Roles Data curation, Investigation, Validation, Writing – review & editing

  Affiliation Department of Medicine, University of Toronto, Toronto, Ontario, Canada

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• Michael Guerzhoy,

  Roles Investigation, Methodology, Software, Writing – review & editing

  Affiliations Princeton University, Princeton, New Jersey, United States of America, University of Toronto, Toronto, Ontario, Canada, Li Ka Shing Knowledge Institute, St. Michael’s Hospital, Unity Health Toronto, Toronto, Ontario, Canada

  https://orcid.org/0000-0003-1856-6742

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• Ujash Joshi,

  Roles Investigation, Methodology, Software, Writing – review & editing

  Affiliation University of Toronto, Toronto, Ontario, Canada

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• Shaun Mathew,

  Roles Investigation, Methodology, Software, Writing – review & editing

  Affiliation Department of Computer Science, Ryerson University, Toronto, Ontario, Canada

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• Chloe Pou-Prom,

  Roles Investigation, Methodology, Software, Writing – review & editing

  Affiliation Unity Health Toronto, Toronto, Ontario, Canada

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• David Dai,

  Roles Investigation, Methodology, Software, Writing – review & editing

  Affiliation Unity Health Toronto, Toronto, Ontario, Canada

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• Victoria Pequegnat,

  Roles Data curation, Resources, Validation, Writing – review & editing

  Affiliation Decision Support Services, St. Michael’s Hospital, Unity Health Toronto, Toronto, Ontario, Canada

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• Joshua Murray,

  Roles Investigation, Methodology, Software, Writing – review & editing

  Affiliation Unity Health Toronto, Toronto, Ontario, Canada

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• Kamalprit Chokar,

  Roles Data curation, Writing – review & editing

  Affiliation Division of Respirology, Department of Medicine, St. Michael’s Hospital, Unity Health Toronto, Toronto, Ontario, Canada

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• Michaelia Banning,

  Roles Project administration, Writing – review & editing

  Affiliation Unity Health Toronto, Toronto, Ontario, Canada

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• Muhammad Mamdani,

  Roles Project administration, Writing – review & editing

  Affiliations Department of Medicine, University of Toronto, Toronto, Ontario, Canada, University of Toronto, Toronto, Ontario, Canada, Li Ka Shing Knowledge Institute, St. Michael’s Hospital, Unity Health Toronto, Toronto, Ontario, Canada, Unity Health Toronto, Toronto, Ontario, Canada, Leslie Dan Faculty of Pharmacy, University of Toronto, Canada, Toronto, Ontario, Canada, Institute of Health Policy, Management, and Evaluation, University of Toronto, Toronto, Ontario, Canada, Vector Institute, Toronto, Ontario, Canada, Institute of Medical Science, University of Toronto, Toronto, Ontario, Canada

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• Sharmistha Mishra ,

  Contributed equally to this work with: Sharmistha Mishra, Jane Batt

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – review & editing

  Affiliations MAP Centre for Urban Health Solutions, Li Ka Shing Knowledge Institute, St. Michael’s Hospital, Unity Health Toronto, Toronto, Ontario, Canada, Department of Medicine, University of Toronto, Toronto, Ontario, Canada, Institute of Health Policy, Management, and Evaluation, University of Toronto, Toronto, Ontario, Canada, Institute of Medical Science, University of Toronto, Toronto, Ontario, Canada

  https://orcid.org/0000-0001-8492-5470

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• Jane Batt

  Contributed equally to this work with: Sharmistha Mishra, Jane Batt

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – review & editing

  * E-mail: Jane.batt@utoronto.ca

  Affiliations Department of Medicine, University of Toronto, Toronto, Ontario, Canada, Institute of Medical Science, University of Toronto, Toronto, Ontario, Canada, Keenan Research Center for Biomedical Science, St. Michael’s Hospital, Unity Health Toronto, Toronto, Ontario, Canada

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