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Open Access
Peer-reviewed
Research Article
High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing
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Rahul C. Bhoyar,
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Validation, Writing – original draft, Writing – review & editing
Affiliation CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India
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Abhinav Jain,
Roles Data curation, Formal analysis, Software, Writing – original draft, Writing – review & editing
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Paras Sehgal,
Roles Data curation, Writing – review & editing
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Mohit Kumar Divakar,
Roles Formal analysis, Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Disha Sharma,
Roles Data curation, Formal analysis
Affiliation CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India
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Mohamed Imran,
Roles Formal analysis, Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Bani Jolly,
Roles Software, Visualization
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Gyan Ranjan,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Mercy Rophina,
Roles Data curation, Software
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Sumit Sharma,
Roles Methodology
Affiliation CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India
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Sanjay Siwach,
Roles Methodology
Affiliation CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India
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Kavita Pandhare,
Roles Software
Affiliation CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India
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Swayamprabha Sahoo,
Roles Data curation
Affiliation Institute of Medical Sciences and SUM Hospital, Siksha “O” Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India
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Maheswata Sahoo,
Roles Data curation
Affiliation Institute of Medical Sciences and SUM Hospital, Siksha “O” Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India
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Ananya Nayak,
Roles Methodology
Affiliation Institute of Medical Sciences and SUM Hospital, Siksha “O” Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India
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Jatindra Nath Mohanty,
Roles Methodology
Affiliation Institute of Medical Sciences and SUM Hospital, Siksha “O” Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India
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Jayashankar Das,
Roles Methodology
Affiliation Institute of Medical Sciences and SUM Hospital, Siksha “O” Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India
⨯ - Sudhir Bhandari,
- Sandeep K. Mathur,
- Anshul Kumar,
- Rahul Sahlot,
- Pallavali Rojarani,
- Juturu Vijaya Lakshmi,
- Avileli Surekha,
- Pulala Chandra Sekhar,
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Shelly Mahajan,
Roles Methodology
Affiliation Center for Advanced Research in Imaging, Neuroscience & Genomics, New Delhi, Delhi, India
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Shet Masih,
Roles Methodology
Affiliation Center for Advanced Research in Imaging, Neuroscience & Genomics, New Delhi, Delhi, India
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Pawan Singh,
Roles Methodology
Affiliation Center for Advanced Research in Imaging, Neuroscience & Genomics, New Delhi, Delhi, India
⨯ -
Vipin Kumar,
Roles Methodology
Affiliation Center for Advanced Research in Imaging, Neuroscience & Genomics, New Delhi, Delhi, India
⨯ -
Blessy Jose,
Roles Methodology
Affiliation Center for Advanced Research in Imaging, Neuroscience & Genomics, New Delhi, Delhi, India
⨯ -
Vidur Mahajan,
Roles Methodology
Affiliation Center for Advanced Research in Imaging, Neuroscience & Genomics, New Delhi, Delhi, India
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Vivek Gupta,
Roles Methodology
Affiliation Government Institute of Medical Sciences, NOIDA, Uttar Pradesh, India
⨯ -
Rakesh Gupta,
Roles Methodology
Affiliation Government Institute of Medical Sciences, NOIDA, Uttar Pradesh, India
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Prabhakar Arumugam,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Anjali Singh,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Ananya Nandy,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Ragavendran P. V.,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Rakesh Mohan Jha,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Anupama Kumari,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Sheetal Gandotra,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Vivek Rao,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Mohammed Faruq,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Sanjeev Kumar,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Betsy Reshma G.,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Narendra Varma G.,
Roles Methodology
Affiliation CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India
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Shuvra Shekhar Roy,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Antara Sengupta,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Sabyasachi Chattopadhyay,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Khushboo Singhal,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Shalini Pradhan,
Roles Methodology
Affiliation CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India
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Diksha Jha,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Salwa Naushin,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Saruchi Wadhwa,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Nishu Tyagi,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Mukta Poojary,
Roles Methodology
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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Vinod Scaria ,
Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Visualization, Writing – original draft, Writing – review & editing
* E-mail: s.sivasubbu@igib.res.in (SS); vinods@igib.res.in (VS)
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
⨯ - [ ... ],
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Sridhar Sivasubbu
Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing
* E-mail: s.sivasubbu@igib.res.in (SS); vinods@igib.res.in (VS)
Affiliations CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India, Academy for Scientific and Innovative Research, Human Resource Development Centre Campus, Ghaziabad, Uttar Pradesh, India
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High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing
- Rahul C. Bhoyar,
- Abhinav Jain,
- Paras Sehgal,
- Mohit Kumar Divakar,
- Disha Sharma,
- Mohamed Imran,
- Bani Jolly,
- Gyan Ranjan,
- Mercy Rophina,
- Sumit Sharma
- Published: February 17, 2021
- https://doi.org/10.1371/journal.pone.0247115