Genome-based characterization of Escherichia coli causing bloodstream infection through next-generation sequencing

Rafika Indah Paramita; Erni Juwita Nelwan; Fadilah Fadilah; Editha Renesteen; Nelly Puspandari; Linda Erlina

doi:10.1371/journal.pone.0244358

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Open Access

Peer-reviewed

Research Article

Genome-based characterization of Escherichia coli causing bloodstream infection through next-generation sequencing

Rafika Indah Paramita,

Roles Conceptualization, Formal analysis, Methodology, Writing – original draft, Writing – review & editing

Affiliations Department of Medical Chemistry, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia, Bioinformatics Core Facilities—IMERI, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia, Master’s Programme in Biomedical Sciences, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia
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Erni Juwita Nelwan,

Roles Supervision

Affiliations Department of Internal Medicine, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia, Infectious Disease and Immunology Research Center—IMERI, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia
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Fadilah Fadilah,

Roles Conceptualization, Supervision

Affiliations Department of Medical Chemistry, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia, Bioinformatics Core Facilities—IMERI, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia, Master’s Programme in Biomedical Sciences, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia
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Editha Renesteen,

Roles Methodology

Affiliation Infectious Disease and Immunology Research Center—IMERI, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia
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Nelly Puspandari,

Roles Resources

Affiliation Centre for Research and Development of Biomedical and Basic Health Technology, National Institute of Health Research and Development, Ministry of Health, DKI Jakarta, Indonesia
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Linda Erlina

Roles Conceptualization, Methodology, Writing – original draft, Writing – review & editing

* E-mail: linda.erlina22@ui.ac.id

Affiliations Department of Medical Chemistry, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia, Bioinformatics Core Facilities—IMERI, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia, Master’s Programme in Biomedical Sciences, Faculty of Medicine, Universitas Indonesia, DKI Jakarta, Indonesia

https://orcid.org/0000-0003-1108-0600

⨯

Genome-based characterization of Escherichia coli causing bloodstream infection through next-generation sequencing

Rafika Indah Paramita,
Erni Juwita Nelwan,
Fadilah Fadilah,
Editha Renesteen,
Nelly Puspandari,
Linda Erlina

Published: December 23, 2020
https://doi.org/10.1371/journal.pone.0244358

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Escherichia coli
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Antimicrobial resistance
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Bacterial pathogens
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Toxins
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Virulence factors
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Bloodstream infections
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Genome sequencing
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