Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data

Ruslan N. Sharipov; Yury V. Kondrakhin; Anna S. Ryabova; Ivan S. Yevshin; Fedor A. Kolpakov

doi:10.1371/journal.pone.0243332

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Open Access

Peer-reviewed

Research Article

Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data

Ruslan N. Sharipov ,

Roles Conceptualization, Data curation, Investigation, Writing – original draft, Writing – review & editing

* E-mail: shrus79@gmail.com

Affiliations Laboratory of Bioinformatics, Federal Research Center for Information and Computational Technologies, Novosibirsk, Russian Federation, Specialized Educational Scientific Center, Novosibirsk State University, Novosibirsk, Russian Federation, BIOSOFT.RU, Ltd, Novosibirsk, Russian Federation

https://orcid.org/0000-0003-2182-5493

⨯
Yury V. Kondrakhin,

Roles Conceptualization, Data curation, Investigation, Methodology, Software, Writing – original draft, Writing – review & editing

Affiliations Laboratory of Bioinformatics, Federal Research Center for Information and Computational Technologies, Novosibirsk, Russian Federation, BIOSOFT.RU, Ltd, Novosibirsk, Russian Federation
⨯
Anna S. Ryabova,

Roles Software, Writing – original draft

Affiliations Laboratory of Bioinformatics, Federal Research Center for Information and Computational Technologies, Novosibirsk, Russian Federation, BIOSOFT.RU, Ltd, Novosibirsk, Russian Federation
⨯
Ivan S. Yevshin,

Roles Data curation, Investigation, Writing – original draft

Affiliations Laboratory of Bioinformatics, Federal Research Center for Information and Computational Technologies, Novosibirsk, Russian Federation, BIOSOFT.RU, Ltd, Novosibirsk, Russian Federation
⨯
Fedor A. Kolpakov

Roles Conceptualization, Funding acquisition, Methodology, Project administration, Software, Supervision, Writing – original draft, Writing – review & editing

Affiliations Laboratory of Bioinformatics, Federal Research Center for Information and Computational Technologies, Novosibirsk, Russian Federation, BIOSOFT.RU, Ltd, Novosibirsk, Russian Federation
⨯

Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data

Ruslan N. Sharipov,
Yury V. Kondrakhin,
Anna S. Ryabova,
Ivan S. Yevshin,
Fedor A. Kolpakov

Published: December 21, 2020
https://doi.org/10.1371/journal.pone.0243332

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Promoter regions
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DU145 cells
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Gene expression
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Primary cells
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