Dissecting seed pigmentation-associated genomic loci and genes by employing dual approaches of reference-based and k-mer-based GWAS with 438 Glycine accessions

Jin-Hyun Kim; Joo-Seok Park; Chae-Young Lee; Min-Gyun Jeong; Jiu Liang Xu; Yongsoo Choi; Ho-Won Jung; Hong-Kyu Choi

doi:10.1371/journal.pone.0243085

Loading metrics

Open Access

Peer-reviewed

Research Article

Dissecting seed pigmentation-associated genomic loci and genes by employing dual approaches of reference-based and k-mer-based GWAS with 438 Glycine accessions

Jin-Hyun Kim,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliations Department of Medical Bioscience, Dong-A University, Busan, Republic of Korea, Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, Republic of Korea
⨯
Joo-Seok Park,

Roles Data curation, Formal analysis, Resources

Affiliation Department of Applied Bioscience, Dong-A University, Busan, Republic of Korea
⨯
Chae-Young Lee,

Roles Resources

Affiliation Department of Medical Bioscience, Dong-A University, Busan, Republic of Korea
⨯
Min-Gyun Jeong,

Roles Data curation, Formal analysis, Investigation, Resources, Visualization, Writing – original draft

Affiliation Department of Applied Bioscience, Dong-A University, Busan, Republic of Korea
⨯
Jiu Liang Xu,

Roles Data curation, Investigation, Resources

Affiliation Systems Biotechnology Research Center, Korea Institute of Science and Technology (KIST), Gangneung, Republic of Korea
⨯
Yongsoo Choi,

Roles Data curation, Formal analysis, Resources

Affiliation Systems Biotechnology Research Center, Korea Institute of Science and Technology (KIST), Gangneung, Republic of Korea
⨯
Ho-Won Jung,

Roles Data curation, Writing – review & editing

Affiliation Department of Molecular Genetics, Dong-A University, Busan, Republic of Korea
⨯
Hong-Kyu Choi

Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

* E-mail: hkchoi@dau.ac.kr

Affiliation Department of Molecular Genetics, Dong-A University, Busan, Republic of Korea

https://orcid.org/0000-0001-8670-6220

⨯

Dissecting seed pigmentation-associated genomic loci and genes by employing dual approaches of reference-based and k-mer-based GWAS with 438 Glycine accessions

Jin-Hyun Kim,
Joo-Seok Park,
Chae-Young Lee,
Min-Gyun Jeong,
Jiu Liang Xu,
Yongsoo Choi,
Ho-Won Jung,
Hong-Kyu Choi

Published: December 1, 2020
https://doi.org/10.1371/journal.pone.0243085

Reader Comments (0)

Post a new comment on this article

Subject Areas
?

For more information about PLOS Subject Areas, click here.
We want your feedback. Do these Subject Areas make sense for this article? Click the target next to the incorrect Subject Area and let us know. Thanks for your help!

Genetic loci
Is the Subject Area "Genetic loci" applicable to this article?

Thanks for your feedback.
Soybeans
Is the Subject Area "Soybeans" applicable to this article?

Thanks for your feedback.
Genomics
Is the Subject Area "Genomics" applicable to this article?

Thanks for your feedback.
Genome-wide association studies
Is the Subject Area "Genome-wide association studies" applicable to this article?

Thanks for your feedback.
Genome analysis
Is the Subject Area "Genome analysis" applicable to this article?

Thanks for your feedback.
Small interfering RNA
Is the Subject Area "Small interfering RNA" applicable to this article?

Thanks for your feedback.
Alleles
Is the Subject Area "Alleles" applicable to this article?

Thanks for your feedback.
Computer software
Is the Subject Area "Computer software" applicable to this article?

Thanks for your feedback.