Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis

• Morten Seirup ,

  Roles Conceptualization, Data curation, Investigation, Methodology, Project administration, Supervision, Validation, Writing – original draft, Writing – review & editing

  * E-mail: seirup@wisc.edu (MT); jthomson@morgridgeinstitute.org (JAT); rbacher@ufl.edu (RB)

  Affiliations Molecular and Environmental Toxicology Program, University of Wisconsin Madison, Madison, Wisconsin, United States of America, Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Li-Fang Chu,

  Roles Investigation, Writing – review & editing

  Affiliation Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Srikumar Sengupta,

  Roles Investigation, Writing – review & editing

  Affiliation Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Ning Leng,

  Roles Formal analysis, Writing – review & editing

  Current address: Genentech, San Francisco, California, United States of America

  Affiliations Morgridge Institute for Research, Madison, Wisconsin, United States of America, Department of Biostatistics and Medical Informatics, University of Wisconsin Madison, Madison, Wisconsin, United States of America

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• Hadley Browder,

  Roles Software, Visualization, Writing – review & editing

  Affiliation Department of Statistics, University of Florida, Gainesville, Florida, United States of America

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• Kevin Kapadia,

  Roles Software, Visualization, Writing – review & editing

  Affiliation Department of Statistics, University of Florida, Gainesville, Florida, United States of America

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• Christina M. Shafer,

  Roles Data curation, Writing – review & editing

  Affiliation Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Bret Duffin,

  Roles Investigation, Writing – review & editing

  Affiliation Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Angela L. Elwell,

  Roles Investigation, Writing – review & editing

  Current address: Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America

  Affiliation Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Jennifer M. Bolin,

  Roles Investigation, Writing – review & editing

  Affiliation Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Scott Swanson,

  Roles Data curation, Software, Validation, Writing – review & editing

  Affiliation Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Ron Stewart,

  Roles Supervision, Writing – review & editing

  Affiliation Morgridge Institute for Research, Madison, Wisconsin, United States of America

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• Christina Kendziorski,

  Roles Supervision, Writing – review & editing

  Affiliation Department of Biostatistics and Medical Informatics, University of Wisconsin Madison, Madison, Wisconsin, United States of America

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• James A. Thomson ,

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Writing – original draft, Writing – review & editing

  * E-mail: seirup@wisc.edu (MT); jthomson@morgridgeinstitute.org (JAT); rbacher@ufl.edu (RB)

  Affiliations Morgridge Institute for Research, Madison, Wisconsin, United States of America, Department of Cell & Regenerative Biology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, United States of America, Department of Molecular, Cellular, & Developmental Biology, University of California Santa Barbara, Santa Barbara, California, United States of America

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• Rhonda Bacher

  Roles Conceptualization, Data curation, Formal analysis, Software, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: seirup@wisc.edu (MT); jthomson@morgridgeinstitute.org (JAT); rbacher@ufl.edu (RB)

  Affiliation Department of Biostatistics, University of Florida, Gainesville, Florida, United States of America

  http://orcid.org/0000-0001-5787-476X

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