Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly

• Christopher H. Gu ,

  Contributed equally to this work with: Christopher H. Gu, Chunyu Zhao

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America

  https://orcid.org/0000-0001-8604-1409

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• Chunyu Zhao ,

  Contributed equally to this work with: Christopher H. Gu, Chunyu Zhao

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – review & editing

  Affiliation Division of Gastroenterology, Hepatology, and Nutrition, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America

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• Casey Hofstaedter,

  Roles Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Division of Gastroenterology, Hepatology, and Nutrition, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America

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• Pablo Tebas,

  Roles Resources, Writing – review & editing

  Affiliation Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America

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• Laurel Glaser,

  Roles Conceptualization, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America

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• Robert Baldassano,

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliation Division of Gastroenterology, Hepatology, and Nutrition, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America

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• Kyle Bittinger ,

  Roles Conceptualization, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: bushman@pennmedicine.upenn.edu (FDB); matteil@email.chop.edu (LMM); bittingerk@email.chop.edu (KB)

  Affiliation Division of Gastroenterology, Hepatology, and Nutrition, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America

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• Lisa M. Mattei ,

  Roles Conceptualization, Investigation, Methodology, Resources, Writing – review & editing

  * E-mail: bushman@pennmedicine.upenn.edu (FDB); matteil@email.chop.edu (LMM); bittingerk@email.chop.edu (KB)

  Affiliation Division of Gastroenterology, Hepatology, and Nutrition, Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America

  https://orcid.org/0000-0002-2238-0281

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• Frederic D. Bushman

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: bushman@pennmedicine.upenn.edu (FDB); matteil@email.chop.edu (LMM); bittingerk@email.chop.edu (KB)

  Affiliation Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America

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