Detection of drug resistant Mycobacterium tuberculosis by high-throughput sequencing of DNA isolated from acid fast bacilli smears

• Mazhgan Rowneki ,

  Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: allandda@njms.rutgers.edu (DA); Mazhgan.Rowneki@VA.gov (MR)

  Current address: War Related Illness and Injury Study Center, Veterans Affairs New Jersey Healthcare System, East Orange, New Jersey, United States of America

  Affiliation Department of Medicine, Rutgers New Jersey Medical School, Newark, New Jersey, United States of America

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• Naomi Aronson,

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Writing – review & editing

  Affiliation Department of Medicine, Uniformed Services University of the Health Sciences, Bethesda, Maryland, United States of America

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• Peicheng Du,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation Office of Advanced Research Computing, Rutgers University, Newark, New Jersey, United States of America

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• Paige Sachs,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Department of Medicine, Uniformed Services University of the Health Sciences, Bethesda, Maryland, United States of America

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• Robert Blakemore,

  Roles Conceptualization, Formal analysis, Methodology, Writing – review & editing

  Current address: Sackler School of Graduate Biomedical Sciences, Tufts University, Boston, Massachusetts, United States of America

  Affiliation Department of Medicine, Rutgers New Jersey Medical School, Newark, New Jersey, United States of America

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• Soumitesh Chakravorty,

  Roles Conceptualization, Methodology, Writing – review & editing

  Current address: Research and Development, Cepheid Inc, Sunnyvale, California, United States of America

  Affiliation Department of Medicine, Rutgers New Jersey Medical School, Newark, New Jersey, United States of America

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• Shawn Levy,

  Roles Data curation, Methodology, Supervision

  Affiliation Genomics Services Laboratory, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, United States of America

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• Angela L. Jones,

  Roles Data curation, Methodology

  Affiliation Genomics Services Laboratory, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, United States of America

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• Geetika Trivedi,

  Roles Data curation, Methodology

  Affiliation Genomics Services Laboratory, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, United States of America

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• Sheilla Chebore,

  Roles Data curation, Methodology, Writing – review & editing

  Affiliation Kenya Medical Research Institute, U.S. Army Medical Research Directorate-Africa, Kericho, Kenya

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• Dennis Addo,

  Roles Data curation, Methodology, Resources, Writing – review & editing

  Affiliation Ghana Armed Forces Tuberculosis Control Program, 37 Military Hospital, Accra, Ghana

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• Denis K. Byarugaba,

  Roles Data curation, Methodology, Resources, Writing – review & editing

  Affiliation Makerere University Walter Reed Project, Kampala, Uganda

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• Panganani Dalisani Njobvu,

  Roles Data curation, Methodology, Writing – review & editing

  Affiliation Zambia Defence Force Medical Services, Maina Soko Military Hospital, Lusaka, Zambia

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• Frederick Wabwire-Mangen,

  Roles Data curation, Methodology, Writing – review & editing

  Affiliation Makerere University Walter Reed Project, Kampala, Uganda

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• Bernard Erima,

  Roles Data curation, Methodology, Writing – review & editing

  Affiliation Makerere University Walter Reed Project, Kampala, Uganda

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• Eric S. Ramos,

  Roles Data curation, Methodology, Writing – review & editing

  Affiliations Innovation For Health And Development, Laboratory for Research and Development (IFHAD), Universidad Peruana Cayetano Heredia, Lima, Peru, Innovacion Por la Salud Y el Desarollo (IPSYD), Asociación Benéfica Prisma, Lima, Peru

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• Carlton A Evans,

  Roles Data curation, Methodology, Visualization, Writing – review & editing

  Affiliations Innovation For Health And Development, Laboratory for Research and Development (IFHAD), Universidad Peruana Cayetano Heredia, Lima, Peru, Infectious Diseases & Immunity, Wellcome Trust Imperial College Centre for Global Health Research, London, United Kingdom

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• Braden Hale,

  Roles Methodology, Writing – review & editing

  Affiliations Naval Health Research Center, Defense Health Agency, San Diego, California, United States of America, University of California San Diego, La Jolla, California, United States of America

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• James D. Mancuso,

  Roles Data curation, Methodology, Writing – review & editing

  Current address: Preventive Medicine and Biostatistics Department, Uniformed Services University of the Health Sciences, Bethesda, Maryland, United States of America

  Affiliation Armed Forces Health Surveillance Branch, Silver Spring, Maryland, United States of America

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•  [ ... ],
• David Alland

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing – review & editing

  * E-mail: allandda@njms.rutgers.edu (DA); Mazhgan.Rowneki@VA.gov (MR)

  Affiliation Department of Medicine, Rutgers New Jersey Medical School, Newark, New Jersey, United States of America

  http://orcid.org/0000-0001-5196-1571

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