Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut

• Yonatan Sher ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Writing – original draft, Writing – review & editing

  * E-mail: jbanfield@berkeley.edu (JFB); sher.yoni@gmail.com (YS)

  Current address: Department of Biotechnology, MIGAL—Galilee Research Institute, Kiryat Shmona, Israel

  Affiliation Department of Environmental Science, Policy, and Management, University of California, Berkeley, Berkeley, California, United States of America

  http://orcid.org/0000-0002-7923-949X

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• Matthew R. Olm,

  Roles Conceptualization, Methodology, Software, Writing – review & editing

  Affiliation Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, United States of America

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• Tali Raveh-Sadka,

  Roles Conceptualization, Data curation

  Affiliation Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, United States of America

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• Christopher T. Brown,

  Roles Methodology, Software

  Affiliation Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, United States of America

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• Ruth Sher,

  Roles Methodology, Software, Writing – review & editing

  Affiliation Enview, Inc., San Francisco, California, United States of America

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• Brian Firek,

  Roles Data curation, Writing – review & editing

  Affiliation Department of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America

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• Robyn Baker,

  Roles Data curation, Writing – review & editing

  Affiliation Magee-Womens Hospital of UPMC, Pittsburgh, Pennsylvania, United States of America

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• Michael J. Morowitz,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  Affiliations Department of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America, Magee-Womens Hospital of UPMC, Pittsburgh, Pennsylvania, United States of America

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• Jillian F. Banfield

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Project administration, Resources, Software, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: jbanfield@berkeley.edu (JFB); sher.yoni@gmail.com (YS)

  Affiliations Department of Environmental Science, Policy, and Management, University of California, Berkeley, Berkeley, California, United States of America, Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, United States of America

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