SMART-Q: An Integrative Pipeline Quantifying Cell Type-Specific RNA Transcription

• Xiaoyu Yang ,

  Contributed equally to this work with: Xiaoyu Yang, Seth Bergenholtz

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Validation, Visualization, Writing – review & editing

  Affiliation Institute for Human Genetics, University of California San Francisco, San Francisco, CA, United States of America

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• Seth Bergenholtz ,

  Contributed equally to this work with: Xiaoyu Yang, Seth Bergenholtz

  Roles Software, Writing – original draft

  Affiliation Institute for Human Genetics, University of California San Francisco, San Francisco, CA, United States of America

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• Lenka Maliskova,

  Roles Data curation

  Affiliation Institute for Human Genetics, University of California San Francisco, San Francisco, CA, United States of America

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• Mark-Phillip Pebworth,

  Roles Resources

  Affiliations Biomedical Sciences Graduate Program, University of California San Francisco, San Francisco, CA, United States of America, The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, UCSF, San Francisco, CA, United States of America

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• Arnold R. Kriegstein,

  Roles Resources

  Affiliations The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, UCSF, San Francisco, CA, United States of America, Department of Neurology, University of California San Francisco, San Francisco, CA, United States of America

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• Yun Li,

  Roles Writing – review & editing

  Affiliation Department of Genetics, Department of Biostatistics, and Department of Computer Science, University of North Carolina, Chapel Hill, NC, United States of America

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• Yin Shen

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  * E-mail: yin.shen@ucsf.edu

  Affiliations Institute for Human Genetics, University of California San Francisco, San Francisco, CA, United States of America, Department of Neurology, University of California San Francisco, San Francisco, CA, United States of America

  http://orcid.org/0000-0001-9901-5613

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