Cattle intestinal microbiota shifts following Escherichia coli O157:H7 vaccination and colonization

• Raies A. Mir ,

  Contributed equally to this work with: Raies A. Mir, Robert G. Schaut

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Current address: Thermo Fisher Scientific, Alachua, Florida, United States of America

  Affiliations Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, IA, United States of America, Oak Ridge Institute for Science and Education (ORISE), ARS Research Participation Program, Oak Ridge, TN, United States of America

  ⨯
• Robert G. Schaut ,

  Contributed equally to this work with: Raies A. Mir, Robert G. Schaut

  Roles Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Current address: Greenfield, Indiana, United States of America

  Affiliations Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, IA, United States of America, Oak Ridge Institute for Science and Education (ORISE), ARS Research Participation Program, Oak Ridge, TN, United States of America

  ⨯
• Heather K. Allen,

  Roles Resources, Writing – review & editing

  Affiliation Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, IA, United States of America

  ⨯
• Torey Looft,

  Roles Methodology, Writing – review & editing

  Affiliation Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, IA, United States of America

  ⨯
• Crystal L. Loving,

  Roles Writing – review & editing

  Affiliation Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, IA, United States of America

  ⨯
• Indira T. Kudva ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: vijay.sharma@ars.usda.gov (VKS); indira.kudva@ars.usda.gov (ITK)

  Affiliation Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, IA, United States of America

  http://orcid.org/0000-0001-6750-7867

  ⨯
• Vijay K. Sharma

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: vijay.sharma@ars.usda.gov (VKS); indira.kudva@ars.usda.gov (ITK)

  Affiliation Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, IA, United States of America

  http://orcid.org/0000-0001-6032-3029

  ⨯