uORF-Tools—Workflow for the determination of translation-regulatory upstream open reading frames

Anica Scholz; Florian Eggenhofer; Rick Gelhausen; Björn Grüning; Kathi Zarnack; Bernhard Brüne; Rolf Backofen; Tobias Schmid

doi:10.1371/journal.pone.0222459

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Open Access

Peer-reviewed

Research Article

uORF-Tools—Workflow for the determination of translation-regulatory upstream open reading frames

Anica Scholz ,

Contributed equally to this work with: Anica Scholz, Florian Eggenhofer

Roles Conceptualization, Formal analysis, Methodology, Software, Writing – original draft

Affiliation Institute of Biochemistry I, Faculty of Medicine, Goethe-University Frankfurt, Frankfurt am Main, Germany
⨯
Florian Eggenhofer ,

Contributed equally to this work with: Anica Scholz, Florian Eggenhofer

Roles Formal analysis, Methodology, Software, Writing – review & editing

* E-mail: egg@informatik.uni-freiburg.de (FE); t.schmid@biochem.uni-frankfurt.de (TS)

Affiliation Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
⨯
Rick Gelhausen,

Roles Methodology, Software

Affiliation Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
⨯
Björn Grüning,

Roles Conceptualization

Affiliation Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
⨯
Kathi Zarnack,

Roles Software

Affiliation Buchmann Institute for Molecular Life Sciences (BMLS), Goethe-University Frankfurt, Frankfurt am Main, Germany
⨯
Bernhard Brüne,

Roles Resources, Supervision

Affiliation Institute of Biochemistry I, Faculty of Medicine, Goethe-University Frankfurt, Frankfurt am Main, Germany
⨯
Rolf Backofen,

Roles Conceptualization, Funding acquisition, Resources, Supervision, Writing – review & editing

Affiliations Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany, Centre for Biological Signalling Studies (BIOSS), University of Freiburg, Freiburg, Germany
⨯
Tobias Schmid

Roles Conceptualization, Formal analysis, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

* E-mail: egg@informatik.uni-freiburg.de (FE); t.schmid@biochem.uni-frankfurt.de (TS)

Affiliation Institute of Biochemistry I, Faculty of Medicine, Goethe-University Frankfurt, Frankfurt am Main, Germany

http://orcid.org/0000-0002-1952-5259

⨯

uORF-Tools—Workflow for the determination of translation-regulatory upstream open reading frames

Anica Scholz,
Florian Eggenhofer,
Rick Gelhausen,
Björn Grüning,
Kathi Zarnack,
Bernhard Brüne,
Rolf Backofen,
Tobias Schmid

Published: September 12, 2019
https://doi.org/10.1371/journal.pone.0222459
See the preprint

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Protein translation
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Genome annotation
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Translation initiation
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