Automated recognition of functional compound-protein relationships in literature

Kersten Döring; Ammar Qaseem; Michael Becer; Jianyu Li; Pankaj Mishra; Mingjie Gao; Pascal Kirchner; Florian Sauter; Kiran K. Telukunta; Aurélien F. A. Moumbock; Philippe Thomas; Stefan Günther

doi:10.1371/journal.pone.0220925

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Open Access

Peer-reviewed

Research Article

Automated recognition of functional compound-protein relationships in literature

Kersten Döring ,

Contributed equally to this work with: Kersten Döring, Ammar Qaseem

Roles Conceptualization, Data curation, Formal analysis, Investigation, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
⨯
Ammar Qaseem ,

Contributed equally to this work with: Kersten Döring, Ammar Qaseem

Roles Data curation, Investigation, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
⨯
Michael Becer,

Roles Data curation, Formal analysis, Investigation, Writing – review & editing

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
⨯
Jianyu Li,

Roles Data curation

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
⨯
Pankaj Mishra,

Roles Data curation

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
⨯
Mingjie Gao,

Roles Data curation

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
⨯
Pascal Kirchner,

Roles Data curation

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
⨯
Florian Sauter,

Roles Data curation

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
⨯
Kiran K. Telukunta,

Roles Investigation, Resources, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany

http://orcid.org/0000-0002-3219-9240

⨯
Aurélien F. A. Moumbock,

Roles Data curation

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany

http://orcid.org/0000-0002-6034-2016

⨯
Philippe Thomas,

Roles Conceptualization, Formal analysis, Validation, Writing – review & editing

Affiliation DFKI Language Technology Lab, Berlin, Germany

http://orcid.org/0000-0001-9136-9660

⨯
Stefan Günther

Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

* E-mail: stefan.guenther@pharmazie.uni-freiburg.de

Affiliation Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany

http://orcid.org/0000-0003-3744-189X

⨯

Automated recognition of functional compound-protein relationships in literature

Kersten Döring,
Ammar Qaseem,
Michael Becer,
Jianyu Li,
Pankaj Mishra,
Mingjie Gao,
Pascal Kirchner,
Florian Sauter,
Kiran K. Telukunta,
Aurélien F. A. Moumbock

Published: March 3, 2020
https://doi.org/10.1371/journal.pone.0220925
See the preprint

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