Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli

• Narjol González-Escalona ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: narjol.gonzalez-escalona@fda.hhs.gov

  Affiliation Center for Food Safety and Applied Nutrition, Food and Drug Administration, College Park, MD, United States of America

  http://orcid.org/0000-0003-4568-0022

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• Marc A. Allard,

  Roles Writing – review & editing

  Affiliation Center for Food Safety and Applied Nutrition, Food and Drug Administration, College Park, MD, United States of America

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• Eric W. Brown,

  Roles Writing – review & editing

  Affiliation Center for Food Safety and Applied Nutrition, Food and Drug Administration, College Park, MD, United States of America

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• Shashi Sharma,

  Roles Writing – review & editing

  Affiliation Center for Food Safety and Applied Nutrition, Food and Drug Administration, College Park, MD, United States of America

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• Maria Hoffmann

  Roles Conceptualization, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliation Center for Food Safety and Applied Nutrition, Food and Drug Administration, College Park, MD, United States of America

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