Molecular analysis of the endobronchial stent microbial biofilm reveals bacterial communities that associate with stent material and frequent fungal constituents

• John E. McGinniss ,

  Contributed equally to this work with: John E. McGinniss, Ize Imai

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

  http://orcid.org/0000-0002-6451-5121

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• Ize Imai ,

  Contributed equally to this work with: John E. McGinniss, Ize Imai

  Roles Data curation, Formal analysis, Investigation, Project administration, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Aurea Simon-Soro,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Melanie C. Brown,

  Roles Data curation, Investigation, Project administration, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Vincent R. Knecht,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Laura Frye,

  Roles Conceptualization, Investigation, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Priyanka M. Ravindran,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Marisol I. Dothard,

  Roles Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Dylan A. Wadell,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Michael B. Sohn,

  Roles Formal analysis, Writing – review & editing

  Affiliation Department of Epidemiology, Biostatistics and Informatics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Hongzhe Li,

  Roles Formal analysis, Writing – review & editing

  Affiliation Department of Epidemiology, Biostatistics and Informatics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Jason D. Christie,

  Roles Funding acquisition, Supervision, Writing – review & editing

  Affiliations Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America, Department of Epidemiology, Biostatistics and Informatics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Joshua M. Diamond,

  Roles Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Andrew R. Haas,

  Roles Resources, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Anthony R. Lanfranco,

  Roles Resources, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• David M. DiBardino,

  Roles Resources, Writing – review & editing

  Affiliation Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Frederic D. Bushman ,

  Roles Conceptualization, Formal analysis, Funding acquisition, Supervision, Validation, Writing – review & editing

  * E-mail: collmanr@pennmedicine.upenn.edu (RGC); bushman@pennmedicine.upenn.edu (FDB)

  Affiliation Department of Microbiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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•  [ ... ],
• Ronald G. Collman

  Roles Conceptualization, Formal analysis, Funding acquisition, Supervision, Validation, Writing – original draft, Writing – review & editing

  * E-mail: collmanr@pennmedicine.upenn.edu (RGC); bushman@pennmedicine.upenn.edu (FDB)

  Affiliations Department of Medicine, Division of Pulmonary, Allergy and Critical Care, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America, Department of Microbiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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