gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

• Juhana I. Kammonen ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: juhana.kammonen@helsinki.fi

  Affiliation DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland

  http://orcid.org/0000-0002-6914-0111

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• Olli-Pekka Smolander,

  Roles Data curation, Formal analysis, Investigation, Supervision, Writing – original draft, Writing – review & editing

  Current address: Department of Chemistry and Biotechnology: Division of Gene Technology, Tallinn University of Technology (TalTech), Tallinn, Estonia

  Affiliation DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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• Lars Paulin,

  Roles Conceptualization, Methodology, Project administration, Supervision, Writing – review & editing

  Affiliation DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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• Pedro A. B. Pereira,

  Roles Data curation, Resources, Validation, Writing – original draft, Writing – review & editing

  Affiliations DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland, Department of Neurology, Helsinki University Hospital, Helsinki, Finland

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• Pia Laine,

  Roles Data curation, Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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• Patrik Koskinen,

  Roles Conceptualization, Data curation, Validation, Writing – review & editing

  Current address: Valuemotive Ltd., Helsinki, Finland

  Affiliation DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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• Jukka Jernvall,

  Roles Funding acquisition, Project administration, Supervision, Validation, Writing – review & editing

  Affiliation Evolutionary Phenomics Group, Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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• Petri Auvinen

  Roles Funding acquisition, Investigation, Project administration, Resources, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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