Gene Cascade Finder: A tool for identification of gene cascades and its application in Caenorhabditis elegans

Yusuke Nomoto; Yukihiro Kubota; Yuto Ohnishi; Kota Kasahara; Aimi Tomita; Takehiro Oshime; Hiroki Yamashita; Muhamad Fahmi; Masahiro Ito

doi:10.1371/journal.pone.0215187

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Open Access

Peer-reviewed

Research Article

Gene Cascade Finder: A tool for identification of gene cascades and its application in Caenorhabditis elegans

Yusuke Nomoto,

Roles Conceptualization, Data curation, Formal analysis, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliation Advanced Life Sciences Program, Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan
⨯
Yukihiro Kubota,

Roles Formal analysis, Writing – original draft, Writing – review & editing

Affiliation Department of Bioinformatics, College of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan
⨯
Yuto Ohnishi,

Roles Methodology, Validation

Affiliation Advanced Life Sciences Program, Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan
⨯
Kota Kasahara,

Roles Software, Visualization

Affiliation Department of Bioinformatics, College of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan
⨯
Aimi Tomita,

Roles Formal analysis, Resources

Affiliation Advanced Life Sciences Program, Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan
⨯
Takehiro Oshime,

Roles Formal analysis, Resources

Affiliation Advanced Life Sciences Program, Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan
⨯
Hiroki Yamashita,

Roles Formal analysis, Resources

Affiliation Advanced Life Sciences Program, Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan
⨯
Muhamad Fahmi,

Roles Methodology, Validation, Visualization, Writing – review & editing

Affiliation Department of Bioinformatics, College of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan
⨯
Masahiro Ito

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

* E-mail: maito@sk.ritsumei.ac.jp

Affiliations Advanced Life Sciences Program, Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan, Department of Bioinformatics, College of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, Japan

http://orcid.org/0000-0001-8364-8440

⨯

Gene Cascade Finder: A tool for identification of gene cascades and its application in Caenorhabditis elegans

Yusuke Nomoto,
Yukihiro Kubota,
Yuto Ohnishi,
Kota Kasahara,
Aimi Tomita,
Takehiro Oshime,
Hiroki Yamashita,
Muhamad Fahmi,
Masahiro Ito

Published: September 10, 2019
https://doi.org/10.1371/journal.pone.0215187
See the preprint

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Gene expression
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Caenorhabditis elegans
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Wnt signaling cascade
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Gene prediction
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Gene regulation
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Stress signaling cascade
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Developmental neuroscience
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DNA transcription
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