Validation of publicly-available software used in analyzing NGS data for HIV-1 drug resistance mutations and transmission networks in a Washington, DC, Cohort

• Kamwing Jair ,

  Contributed equally to this work with: Kamwing Jair, Chase D. McCann

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Epidemiology and Biostatistics, Milken Institute School of Public Health, The George Washington University, Washington, DC, United States of America

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• Chase D. McCann ,

  Contributed equally to this work with: Kamwing Jair, Chase D. McCann

  Roles Data curation, Formal analysis, Methodology, Software, Validation, Writing – review & editing

  Affiliation Department of Immunology and Microbial Pathogenesis, Weill Cornell Graduate School of Medical Sciences, New York, NY, United States of America

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• Harrison Reed,

  Roles Data curation, Formal analysis, Methodology, Software, Writing – review & editing

  Affiliation Department of Forensic Sciences, Public Health Laboratory, District of Columbia, Washington, DC, United States of America

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• Amanda D. Castel,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Department of Epidemiology and Biostatistics, Milken Institute School of Public Health, The George Washington University, Washington, DC, United States of America

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• Marcos Pérez-Losada,

  Roles Conceptualization, Funding acquisition, Writing – review & editing

  Affiliations Department of Epidemiology and Biostatistics, Milken Institute School of Public Health, The George Washington University, Washington, DC, United States of America, GWU Computational Biology Institute and CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, Vairão, Portugal

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• Brittany Wilbourn,

  Roles Data curation, Formal analysis, Resources, Writing – review & editing

  Affiliation Department of Epidemiology and Biostatistics, Milken Institute School of Public Health, The George Washington University, Washington, DC, United States of America

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• Alan E. Greenberg,

  Roles Conceptualization, Project administration, Resources, Writing – review & editing

  Affiliation Department of Epidemiology and Biostatistics, Milken Institute School of Public Health, The George Washington University, Washington, DC, United States of America

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• Jeanne A. Jordan ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: jajordan@gwu.edu

  Affiliation Department of Epidemiology and Biostatistics, Milken Institute School of Public Health, The George Washington University, Washington, DC, United States of America

  http://orcid.org/0000-0002-1859-1393

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• the DC Cohort Executive Committee

  ¶Membership of the DC Cohort Executive Committee is provided in the Acknowledgments.

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