PhyloPi: An affordable, purpose built phylogenetic pipeline for the HIV drug resistance testing facility

• Phillip Armand Bester ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Writing – original draft, Writing – review & editing

  * E-mail: besterpa@ufs.ac.za, besterpa.sci@gmail.com

  Affiliation Division of Virology, University of the Free State and National Health Laboratory Service (NHLS), Bloemfontein, South Africa

  http://orcid.org/0000-0002-5795-5313

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• Andrie De Vries,

  Roles Conceptualization, Formal analysis, Methodology, Visualization

  Affiliation RStudio Team (2016). RStudio: Integrated Development for R. RStudio, Inc., Boston, MA, United States of America

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• Stephanus Riekert,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Information and Communication Technology Services, University of the Free State, Bloemfontein, South Africa

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• Kim Steegen,

  Roles Methodology, Validation, Writing – review & editing

  Affiliation Department of Molecular Medicine and Haematology, University of the Witwatersrand, Johannesburg, South Africa

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• Gert van Zyl,

  Roles Methodology, Validation, Writing – review & editing

  Affiliation Division of Medical Virology, Stellenbosch University and National Health Laboratory Service (NHLS) Tygerberg, Cape Town, South Africa

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• Dominique Goedhals

  Roles Conceptualization, Methodology, Resources, Validation, Writing – original draft, Writing – review & editing

  Affiliation Division of Virology, University of the Free State and National Health Laboratory Service (NHLS), Bloemfontein, South Africa

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