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Open Access
Peer-reviewed
Research Article
Managing genomic variant calling workflows with Swift/T
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Azza E. Ahmed ,
Contributed equally to this work with: Azza E. Ahmed, Jacob Heldenbrand
Roles Conceptualization, Data curation, Formal analysis, Investigation, Software, Visualization, Writing – original draft
Affiliations Centre for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan, Department of Electrical and Electronic Engineering, Faculty of Engineering, University of Khartoum, Khartoum, Sudan
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Jacob Heldenbrand ,
Contributed equally to this work with: Azza E. Ahmed, Jacob Heldenbrand
Roles Conceptualization, Data curation, Formal analysis, Investigation, Software, Visualization, Writing – original draft
Affiliation National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Yan Asmann,
Roles Resources
Affiliation Department of Health Sciences Research, Mayo Clinic, Jacksonville, Florida, United States of America
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Faisal M. Fadlelmola,
Roles Supervision
Affiliation Centre for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan
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Daniel S. Katz,
Roles Supervision, Writing – review & editing
Affiliation National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Katherine Kendig,
Roles Writing – review & editing
Affiliation National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Matthew C. Kendzior,
Roles Investigation, Software, Validation
Affiliation Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Tiffany Li,
Roles Writing – original draft
Affiliation National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Yingxue Ren,
Roles Data curation
Affiliation Department of Health Sciences Research, Mayo Clinic, Jacksonville, Florida, United States of America
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Elliott Rodriguez,
Roles Software
Affiliation National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Matthew R. Weber,
Roles Investigation, Validation
Affiliation Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Justin M. Wozniak,
Roles Resources, Software
Affiliation Argonne National Laboratory, Argonne, Illinois, United States of America
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Jennie Zermeno,
Roles Writing – original draft
Affiliation National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Liudmila S. Mainzer
Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Supervision, Validation, Writing – review & editing
* E-mail: lmainzer@illinois.edu
Affiliations National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America, Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, United States of America
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Managing genomic variant calling workflows with Swift/T
- Azza E. Ahmed,
- Jacob Heldenbrand,
- Yan Asmann,
- Faisal M. Fadlelmola,
- Daniel S. Katz,
- Katherine Kendig,
- Matthew C. Kendzior,
- Tiffany Li,
- Yingxue Ren,
- Elliott Rodriguez
- Published: July 9, 2019
- https://doi.org/10.1371/journal.pone.0211608
- See the preprint